hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg05167/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0657 ( 782 res) mbg05167 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ig Immunoglobulin domain 165.4 9.7e-46 7 I-set Immunoglobulin I-set domain 68.0 2e-16 3 V-set Immunoglobulin V-set domain 66.4 6.3e-16 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/7 67 126 .. 1 65 [] 20.3 0.045 V-set 1/5 51 138 .. 1 130 [] 7.1 0.12 ig 2/7 158 217 .. 1 65 [] 24.7 0.0022 ig 3/7 250 309 .. 1 65 [] 37.9 2.3e-07 V-set 2/5 225 319 .. 1 130 [] 3.5 0.27 I-set 1/3 233 326 .. 1 97 [] 2.4 0.0078 ig 4/7 342 401 .. 1 65 [] 24.8 0.002 V-set 3/5 324 417 .. 1 130 [] 9.4 0.071 ig 5/7 438 497 .. 1 65 [] 21.1 0.026 V-set 4/5 420 507 .. 1 130 [] 16.1 0.015 ig 6/7 619 677 .. 1 65 [] 13.0 2.7 I-set 2/3 605 690 .. 1 97 [] 34.3 2.7e-06 ig 7/7 709 768 .. 1 65 [] 25.3 0.0015 I-set 3/3 694 780 .. 1 97 [] 31.2 2.3e-05 V-set 5/5 693 780 .. 1 130 [] 30.3 4.5e-05 Alignments of top-scoring domains: ig: domain 1 of 7, from 67 to 126: score 20.3, E = 0.045 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e+v LtC+ p ++v+W+++g ++ ++ +++ + mKIAA0657 67 LERVVLTCEL---CRPWAEVRWTKDGEeVVeSPALLLEKEDTIRR-- 108 tsLtitnvtpeDggtYtCvv<-* L++ +v+ eD+g+Y C+ mKIAA0657 109 --LVLPSVQLEDSGEYLCEI 126 V-set: domain 1 of 5, from 51 to 138: score 7.1, E = 0.12 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + v+ ++ +v +++ ++v L+C + + ++ mKIAA0657 51 SWIVYPSSEV----------HVAAVRLERVVLTCELC-----R--PW 80 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg ++ v W +++ e+p l+ ++ +++r mKIAA0657 81 AE--VRWTKDgEEVVESPALLL------------------EKEDTIR--- 107 npskgdfsLtIsnlqlsDsGtYyCa....gggtrLtVl<-* + L + ++ql+DsG Y C +++ + + tV+ mKIAA0657 108 --R-----LVLPSVQLEDSGEYLCEihdeSASFTITVT 138 ig: domain 2 of 7, from 158 to 217: score 24.7, E = 0.0022 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e v LtC+ + +d+ v+W+++g ++++++ ++ ++ mKIAA0657 158 LECVVLTCEL---SREDAPVRWYKDGLeVEeSEALVLQSDGPRRR-- 199 tsLtitnvtpeDggtYtCvv<-* L++ +++peDgg++ C + mKIAA0657 200 --LVLPAAQPEDGGEFVCDA 217 ig: domain 3 of 7, from 250 to 309: score 37.9, E = 2.3e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++v L+C+v +p + +v+W+++g +++ ++ ++ +t mKIAA0657 250 PGHVELRCEV---APAGSQVRWYKDGLeVEvSDALQLGAEGPART-- 291 tsLtitnvtpeDggtYtCvv<-* Lt+ ++peD+g+Y C+ mKIAA0657 292 --LTLPHAQPEDAGEYVCET 309 V-set: domain 2 of 5, from 225 to 319: score 3.5, E = 0.27 *->qstvtqepprLLLASLfW.p.t....svtvaeGgsvtLpCtysGtfd +tvt+ p+r + +p +++ + ++a+G +L+C + mKIAA0657 225 TVTVTAPPER------IVhPaArsldLQFGAPGHV-ELRCEVA---- 260 dsssssgtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgr + g+ +v Wy+ + + + ++ mKIAA0657 261 PA----GS-QVRWYK-DGL------------------------EVEVSDA 280 vrfsgnpskgdfsLtIsnlqlsDsGtYyCa..gggtrLtVl<-* ++ + ++ +Lt+ ++q++D G Y C ++ + ++ V+ mKIAA0657 281 LQLGAEGP--ARTLTLPHAQPEDAGEYVCEtrDEAVTFNVS 319 I-set: domain 1 of 3, from 233 to 326: score 2.4, E = 0.0078 *->PkFtqkp.kdveVqeGes..arfeCkV..tGtPePtVsWfKdGqpls +++ + +++ q G ++++++ C+V + G+ +V W+KdG ++ mKIAA0657 233 ERIVHPAaRSLDLQFGAPghVELRCEVapAGS---QVRWYKDGLEVE 276 svllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeas + sd ++ ++g tLt + +qp+D+G+Y+C + + + + mKIAA0657 277 V----SDALQLGAEG--PARTLTLPHAQPEDAGEYVCETRDEaVTFNVSL 320 aeLtVq<-* aeL Vq mKIAA0657 321 AELPVQ 326 ig: domain 4 of 7, from 342 to 401: score 24.8, E = 0.002 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+v L+C+ + +++v+W +ng ++++g ++ + + +g + mKIAA0657 342 GEPVVLSCEL---SRASAQVFWSHNGSpVQqG-EGLELRAEGPRRI- 383 tsLtitnvtpeDggtYtCvv<-* L i++++ ++g+YtC+ mKIAA0657 384 --LCIQAADLAHTGVYTCQS 401 V-set: domain 3 of 5, from 324 to 417: score 9.4, E = 0.071 *->qstvtqepprLLLASLfWp.t.svtvaeGgsvtLpCtysGtfddsss +++ + p+ + ++++ v++G+ v L+C +s + mKIAA0657 324 PVQFLA--PE--------AaPnPLCVVPGEPVVLSCELS-----R-- 353 ssgtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfs ++ +v+W+ ++s+++++ + + r g +r mKIAA0657 354 --ASAQVFWSH-----------------NGSPVQQGEGLELRAEGPRR-- 382 gnpskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* L I+ + l+++G+Y+C+++ +++ + + +++V mKIAA0657 383 --------ILCIQAADLAHTGVYTCQsgaspgapSLSFNVQVA 417 ig: domain 5 of 7, from 438 to 497: score 21.1, E = 0.026 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L+ + + p++ v+W+++g +l + +v + + +++ mKIAA0657 438 GGDLELVVHL---SRPGTPVRWYKDGErLAsQGRVQLEQAGARQV-- 479 tsLtitnvtpeDggtYtCvv<-* L+++ ++++D+g+Y C + mKIAA0657 480 --LRVRGARRGDAGEYLCDA 497 V-set: domain 4 of 5, from 420 to 507: score 16.1, E = 0.015 *->qstvtqepprLLLASLfWp.tsvtvaeGgsvtLpCtysGtfddssss ++ v + p++ ++tsv+ +Gg+++L ++s + mKIAA0657 420 PVRVVA-PEA--------AqTSVRSTPGGDLELVVHLS----RP--- 450 sgtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfs gt v Wy+++ ++ +grv++ mKIAA0657 451 -GT-PVRWYKDgERL--------------------------ASQGRVQLE 472 gnpskgdfsLtIsnlqlsDsGtYyCa..gggtrLtVl<-* + + + L+ + +++ D G Y C ++ + +V+ mKIAA0657 473 QAGA--RQVLRVRGARRGDAGEYLCDapQDSRIFIVS 507 ig: domain 6 of 7, from 619 to 677: score 13.0, E = 2.7 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ +t+ C+v + ++t +W +g l +g +v++ +++ +++ mKIAA0657 619 GDGATFECTV---SETEITGRWELGGRaLRpGGRVRIRQEGKKHI-- 660 tsLtitnvtpeDggtYtCvv<-* L++++++ eD+g+ C mKIAA0657 661 --LVLSELRTEDTGE-VCFQ 677 I-set: domain 2 of 3, from 605 to 690: score 34.3, E = 2.7e-06 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp + ++++++v ++eG+ a+feC+V+ t e t W +G+ l++ mKIAA0657 605 VSVLRELRSVSAREGDGATFECTVSET-EITGRWELGGRALRP---- 646 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq ++r++++ +g + + L+ s+ +D G+ ++A G a++ a+L V+ mKIAA0657 647 GGRVRIRQEG--KKHILVLSELRTEDTGEVCFQA----GPAQSLARLEVE 690 <-* mKIAA0657 - - ig: domain 7 of 7, from 709 to 768: score 25.3, E = 0.0015 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + ++ L +v + p+ +v W r+g +l +g+++ +++++++ mKIAA0657 709 NRRAVLEVTV---SRPGGHVCWMREGVeLCpGNKYEMRRHGTTHS-- 750 tsLtitnvtpeDggtYtCvv<-* L+i++v+peD gtY+C++ mKIAA0657 751 --LVIHDVRPEDQGTYSCQA 768 I-set: domain 3 of 3, from 694 to 780: score 31.2, E = 2.3e-05 *->PkFtqkp.kdveVqeGesarfeCkVt...GtPePtVsWfKdGqplss + ++p++ +V + +a++e++V++++G+ V W + G +l + mKIAA0657 694 LQMCRRPpREKTVLVNRRAVLEVTVSrpgGH----VCWMREGVELCP 736 vllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasae + ++ ++ g t++L+I +v p+D G+Y+C+A G+++a+ + mKIAA0657 737 ----GNKYEMRRHG--TTHSLVIHDVRPEDQGTYSCQA----GQDSADTQ 776 LtVq<-* L V mKIAA0657 777 LLVD 780 V-set: domain 5 of 5, from 693 to 780: score 30.3, E = 4.5e-05 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +++++ +ppr + tv + ++ L t+s mKIAA0657 693 PLQMCRRPPR----------EKTVLVNRRAVLEVTVS---------- 719 gtg.svyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsg ++g++v W+r e ++g+ + mKIAA0657 720 RPGgHVCWMR--------------------------EGVELCPGNK-YEM 742 npskgdfsLtIsnlqlsDsGtYyCa....gggtrLtVl<-* + +++ sL I++++++D GtY C+ + + t+L V mKIAA0657 743 RRHGTTHSLVIHDVRPEDQGTYSCQagqdSADTQLLVD 780 //