hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00059/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0655  ( 1083 res)   mfj00059

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
I_LWEQ   I/LWEQ domain                                  420.4   1.6e-122   1
ANTH     ANTH domain                                    373.1   2.9e-108   1
ENTH     ENTH domain                                    117.1    3.4e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ENTH       1/1      43   162 ..     1   140 []   117.1  3.4e-31
ANTH       1/1      43   315 ..     1   301 []   373.1 2.9e-108
I_LWEQ     1/1     834  1027 ..     1   202 []   420.4 1.6e-122

Alignments of top-scoring domains:
ENTH: domain 1 of 1, from 43 to 162: score 117.1, E = 3.4e-31
                   *->yseaeikVreATnnDpwGP.sgklmaeIaeaTyneklyvefeeimsv
                      +++++i++++A+n+++ +P ++k+ ++I+ +T++ek++++f+++++ 
   mKIAA0655    43    DKTQAISISKAINSQE-APvKEKHARRIILGTHHEKGAFTFWSYAIG 88   

                   LwkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfn
                   L+   +       ++++ ++K++++L+++l++G+++v++d +++++   n
   mKIAA0655    89 LP---L------SSSSILSWKFCHVLHKVLRDGHPNVLHDYQRYRS---N 126  

                   IrtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-*
                   Ir++        D +G+ lr+++G+ V++++k+ll++++++ ++   
   mKIAA0655   127 IREIG-------DLWGH-LRDQYGHLVNIYTKLLLTKISFHLKH    162  

ANTH: domain 1 of 1, from 43 to 315: score 373.1, E = 2.9e-108
                   *->dsdLevAVvKATshedevPpKekhvreIlvtTssnspakvaacfwal
                      d++++++++KA++  +e+P+Kekh+r+I+++T++   +k a++fw++
   mKIAA0655    43    DKTQAISISKAINS-QEAPVKEKHARRIILGTHH---EKGAFTFWSY 85   

                   srRlpltrnwvValKaLiliHklLreGhpsvlqellrarrrissllriss
                   ++ lpl+++ ++ +K+++++Hk+Lr+Ghp+vl++++r+r  i++++++++
   mKIAA0655    86 AIGLPLSSSSILSWKFCHVLHKVLRDGHPNVLHDYQRYRSNIREIGDLWG 135  

                   RftfrddsssltwdygafiRaYakYLdeRlefhrklpvdpGtferveygt
                            +l + yg +++ Y k+L+++++fh k+p +p  +e+ +++ 
   mKIAA0655   136 ---------HLRDQYGHLVNIYTKLLLTKISFHLKHPQFPAGLEVTDEVL 176  

                   stakkslvavddpnerNNYyeltmsmedlLdkipkLQklldrllkckptg
                        ++ a+ d n+    ++lt++m+d++d+ +kL + ++r l++ + +
   mKIAA0655   177 -----EKAAGTDVNNI---FQLTVEMFDYMDCELKLSESVFRQLNTAIAV 218  

                   nals.neciiaAlillikEsfglYkainegiinLlekffedklskhdAda
                   +++s+++c++a+li++i+++++lY+++++++++L+++++         d+
   mKIAA0655   219 SQMSsGQCRLAPLIQVIQDCSHLYHYTVKLMFKLHSCLPA--------DT 260  

                   aldiykrfskQferLkeFyevCkslgylrsletIPkLphiPpnllealee
                   ++++++rf++Qf+ Lk+F+++++++ y+++l++IP+Lp+ Ppn+l+a+ +
   mKIAA0655   261 LQGHRDRFHEQFHSLKNFFRRASDMLYFKRLIQIPRLPEGPPNFLRASAL 310  

                   ylrdp<-*
                    ++++   
   mKIAA0655   311 AEHIK    315  

I_LWEQ: domain 1 of 1, from 834 to 1027: score 420.4, E = 1.6e-122
                   *->VnesILsaakaImkAiaaLVkAAsaaQrEivaqGrgsaspaefYkkn
                      Vne+IL++++++mkAi+ LV +++++Q+Eiv++Grg+a+++efY+kn
   mKIAA0655   834    VNERILNSCTDLMKAIRLLVMTSTSLQKEIVESGRGAATQQEFYAKN 880  

                   srWTEGLISAAKaVgaAttvLvEAAdkvVtsEDnGkgsfEeLIVaakeVA
                   srWTEGLISA+KaVg+++t+LvE+AdkvV     + g++EeLIV+++e+A
   mKIAA0655   881 SRWTEGLISASKAVGWGATQLVESADKVVL----HMGKYEELIVCSHEIA 926  

                   ASTAQLVaASrVKAGDDkdSkaAldrLqaAakaVneAtanLVaaaksgai
                   ASTAQLVaAS+VKA  +k S++ l+rLq+++++Vne++an+Va++ksg++
   mKIAA0655   927 ASTAQLVAASKVKA--NKNSPH-LSRLQECSRTVNERAANVVASTKSGQE 973  

                   fdiedqqeedfsslslhglKaqEmEqQveiLkLEkeLeeARkkLaelRKq
                   + ied++++dfs+lsl++lK+qEmE+Qv++L+LEk+Le++R +L+elRKq
   mKIAA0655   974 Q-IEDRDTMDFSGLSLIKLKKQEMETQVRVLELEKTLEAERVRLGELRKQ 1022 

                   hYela<-*
                   hY+la   
   mKIAA0655  1023 HYVLA    1027 

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