hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh05075/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0653  ( 177 res)   mnh05075

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2-set_2 CD80-like C2-set immunoglobulin domain          25.9    0.00097   1
C1-set   Immunoglobulin C1-set domain                     2.7      0.023   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2-set_2   1/1      20   108 ..     1   101 []    25.9  0.00097
C1-set     1/1      26   109 ..     1    92 []     2.7    0.023

Alignments of top-scoring domains:
C2-set_2: domain 1 of 1, from 20 to 108: score 25.9, E = 0.00097
                   *->peIeppasllegeksenlevvatCvlpysagGkPapritWy..ldgk
                       +++++ s   ++   ++e++ tC    s +G+P+p++ W++++d+ 
   mKIAA0653    20    STPVISTSDSSNP---GQERTYTCM---SKNGYPEPNLYWIntTDNS 60   

                   elvpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsyg
                          ++a    +   +  gly v+StL+l  +    +  + C+v++ 
   mKIAA0653    61 LI-----DTALQNNTVYLNKLGLYDVISTLRLPWT---SRGDVLCCVENV 102  

                   alrgsk<-*
                   al++++   
   mKIAA0653   103 ALHQNI    108  

C1-set: domain 1 of 1, from 26 to 109: score 2.7, E = 0.023
                   *->ppgspepelgkpntLvClVtgFyPpdItVtW..lkNGqevtegvest
                      ++ ++    g++ t +C+ ++ yP++ +  W ++ ++  ++++ + +
   mKIAA0653    26    TS-DSS-NPGQERTYTCMSKNGYPEP-NLYWinTTDNSLIDTALQNN 69   

                   eplpkngDgtYqlsSyLtftasep.esgdsYtCrVeHesLkvenePlt<-
                   + +  n+ g Y + S+L ++   ++++gd   C Ve  +L+   + +t  
   mKIAA0653    70 TVYL-NKLGLYDVISTLRLP---WtSRGD-VLCCVENVALH---QNIT   109  

                   *
                    
   mKIAA0653     -   -    

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