hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08359/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0650  ( 1066 res)   mpm08359

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SMC_hinge SMC proteins Flexible Hinge Domain            108.9      1e-28   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SMC_hinge   1/1     778   907 ..     1   124 []   108.9    1e-28

Alignments of top-scoring domains:
SMC_hinge: domain 1 of 1, from 778 to 907: score 108.9, E = 1e-28
                   *->asgv.lGrvadlisvkekgyekAleaaLGndLdavvVenaeaaraal
                      +sg+ lG +a+l ++++++ ++ ++++L +d+d+vv+ + +aara++
   mKIAA0650   778    RSGDiLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARAIY 824  

                   eelkearlGRatFlPLdkikpnalvsalralp.gatplagkvrlaa....
                   +e+++++    ++lPLd i +++l++     +++++p++++++l +++ +
   mKIAA0650   825 DETQGRQ----QVLPLDSIYRKTLPD-----WkRPLPHFRNGKLHFkpfg 865  

                   ......dlityd...pelrkalnrlLgqtlvVedldqArrla<-*
                   ++   +dl+t++++ +++++++ +lLg+t++ ++ld+A++++   
   mKIAA0650   866 npvfarDLLTFPdniEHCETVFGMLLGDTIILDNLDAANHYR    907  

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