hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/meh/meh01005/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0648  ( 1122 res)   meh01005

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HEAT     HEAT repeat                                     26.2    0.00074   4
DUP      DUP family                                     -32.7       0.44   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HEAT       1/4      73   110 ..     1    36 []     3.5       79
DUP        1/1      86   186 ..     1   111 []   -32.7     0.44
HEAT       2/4     287   322 ..     1    36 []     1.6  1.5e+02
HEAT       3/4     402   438 ..     1    36 []    18.4     0.16
HEAT       4/4     682   718 ..     1    36 []     3.5       80

Alignments of top-scoring domains:
HEAT: domain 1 of 4, from 73 to 110: score 3.5, E = 79
                   *->e.lldellplllklln.DpdpeVReaAaeaLgalaevl<-*
                      +++l+  l l  + + + p+ +VR+ +a +L+++ +++   
   mKIAA0648    73    QqYLPLALHLASEFFLrNPNKDVRLLVACCLADIFRIY    110  

DUP: domain 1 of 1, from 86 to 186: score -32.7, E = 0.44
                   *->ivlfinvsrclvllvlslflvliflllvvifqfsryislkvkmefkm
                      ++l ++++   v l++  +l+ if ++ +   + +   +k+k+ f++
   mKIAA0648    86    FFLRNPNKD--VRLLVACCLADIFRIYAPEAPYTS--HDKLKDIFLF 128  

                   QlLsEIItekPavdgkeWdtIAynMNqYLF..EnklW.nTpyFFfdGedC
                         It++ ++  +  dt    +N+Y++  En +W ++    f  edC
   mKIAA0648   129 ------ITRQLKG-LE--DTKSPQFNRYFYllENLAWvKSYNICFELEDC 169  

                   eeFFrklikeplslkks<-*
                    e F  l+ +++s+ ++   
   mKIAA0648   170 NEIFIQLFRTLFSVINN    186  

HEAT: domain 2 of 4, from 287 to 322: score 1.6, E = 1.5e+02
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      + ll +++p l   l+++d e R+a+++ L++l       
   mKIAA0648   287    QlLL-SVMPQLEFKLKSNDGEERLAVVRLLAKLFGSK    322  

HEAT: domain 3 of 4, from 402 to 438: score 18.4, E = 0.16
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      + + d+ll ++ +   D+ ++VR+ A   L++l++++   
   mKIAA0648   402    AlVNDQLLGFVRERTLDKRWRVRKEAMMGLAQLYKKY    438  

HEAT: domain 4 of 4, from 682 to 718: score 3.5, E = 80
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      + +  e  + ll++l+ +d++V eaA++ + +   ++   
   mKIAA0648   682    SfHSAETYESLLQCLRMEDDKVAEAAIQIFRNTGHKI    718  

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