hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01911/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0647  ( 1186 res)   mbg01911

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Myotub-related Myotubularin-related                     270.7      2e-77   1
FYVE           FYVE zinc finger                          80.5    3.5e-20   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Myotub-related   1/1     179   337 ..     1   123 []   270.7    2e-77
FYVE             1/1    1100  1166 ..     1    77 []    80.5  3.5e-20

Alignments of top-scoring domains:
Myotub-related: domain 1 of 1, from 179 to 337: score 270.7, E = 2e-77
                   *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv
                      Y+lCpsYP+kL+VP++i+D+eL++vA+FRs++R+PV+++rH +ngA+
   mKIAA0647   179    YKLCPSYPQKLLVPVWITDKELENVASFRSWKRIPVVVYRHLRNGAA 225  

                   IvRcSQPLvGfsgkRckeDEkllkailkanaiD.................
                   I+RcSQP+++++g+R+++DE+l+++i+ka+a+D++++ ++++ ++++++ 
   mKIAA0647   226 IARCSQPEISWWGWRNADDEYLVTSIAKACALDpgtrasggslstgtnda 275  

                   ..................e.kiqskklyIvDaRprtnAlaNrAkGGGyEn
                   ++  +++ +++ +  ++ e++++++kl+I+DaR++t+A+aNrAkGGG+E+
   mKIAA0647   276 seacdtdfdssltacsgvEsTAAPQKLLILDARSYTAAVANRAKGGGCEC 325  

                   eenYpnaelvfl<-*
                   ee+Ypn+e+ f+   
   mKIAA0647   326 EEYYPNCEVLFM    337  

FYVE: domain 1 of 1, from 1100 to 1166: score 80.5, E = 3.5e-20
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll
                      ++WvpD  +s+C++C  +F  l kRrHHCR+CG++fC  C+  ++++
   mKIAA0647  1100    TRWVPDHMASHCFNCDCEFW-LAKRRHHCRNCGNVFCAGCCHLKLPI 1145 

                   pylgiaallkndviekpvRVCdsCydrlnk<-*
                   p ++          + pv VC+sCy++ +    
   mKIAA0647  1146 PDQQL---------YDPVLVCNSCYEHIQV    1166 

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