hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf01029/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0646  ( 749 res)   mpf01029

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
G-patch  glycine rich nucleic binding domain             50.0    3.1e-10   1
FHA      Forkhead associated domain                      41.2    1.4e-07   1
RING     Ring finger                                     38.5    9.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FHA        1/1      67   122 ..     1    49 []    41.2  1.4e-07
RING       1/1     436   473 ..     1    23 []    38.5  9.1e-07
G-patch    1/1     554   600 ..     1    48 []    50.0  3.1e-10

Alignments of top-scoring domains:
FHA: domain 1 of 1, from 67 to 122: score 41.2, E = 1.4e-07
                   *->tvtiGRss.cdivlpsps....iSRrHaeiv...dgd.yliDlgenS
                      +vtiGR+ +  ++l s+  +  iSR H++++++++g+  + D+   S
   mKIAA0646    67    EVTIGRGLsVTYQLISKVcplmISRSHCVLKqnpEGQwTIMDNK--S 111  

                   sNGTfVNgrrv<-*
                    NG+++N++r+   
   mKIAA0646   112 LNGVWLNRERL    122  

RING: domain 1 of 1, from 436 to 473: score 38.5, E = 9.1e-07
                   *->CpICle....pvvlpCgH.FCr.Ci.........CPlC<-*
                      C IC e   ++v+l+C H+FC  Ci+++ +++ +CP+C   
   mKIAA0646   436    CIICSEyfieAVTLNCAHsFCSfCInewmkrkveCPIC    473  

G-patch: domain 1 of 1, from 554 to 600: score 50.0, E = 3.1e-10
                   *->istsniGaklLekMGWkeGkGLGkneqGivePIeakikkkdrkGLGa
                        +++++++l++kMG++eG+GLGk  qG+++ +e+  + k r+GLG 
   mKIAA0646   554    SMYNSVSQRLMAKMGFREGEGLGKYSQGRKDIVETSNQ-KGRRGLGL 599  

                   v<-*
                       
   mKIAA0646   600 T    600  

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