hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf01029/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0646  ( 749 res)   mpf01029

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
G-patch  G-patch domain                                  57.9    2.2e-13   1
FHA      FHA domain                                      48.9    1.2e-10   1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           42.0    1.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FHA        1/1      68   139 ..     1    94 []    48.9  1.2e-10
zf-C3HC4   1/1     436   473 ..     1    50 []    42.0  1.3e-08
G-patch    1/1     556   600 ..     1    45 []    57.9  2.2e-13

Alignments of top-scoring domains:
FHA: domain 1 of 1, from 68 to 139: score 48.9, E = 1.2e-10
                   *->vtiGRdsdsddilldddqdislsg.siSrrHatieykdggvslelaf
                      vtiGR+ + +  l+++ +        iSr H++++ +++g++     
   mKIAA0646    68    VTIGRGLSVTYQLISKVC-----PlMISRSHCVLKQNPEGQW----- 104  

                   rlaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             ++ D +s+n  G +++N++rl +++ + ++ Gd i+lG  
   mKIAA0646   105 ----------TIMDNKSLN--G-VWLNRERLAPLQGYCIRKGDHIQLG   139  

                   *
                    
   mKIAA0646     -   -    

zf-C3HC4: domain 1 of 1, from 436 to 473: score 42.0, E = 1.3e-08
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C IC e+++e++     +l C Hs     fC++C+ +w +  +++ C
   mKIAA0646   436    CIICSEYFIEAV-----TLNCAHS-----FCSFCINEWMK--RKVEC 470  

                   plC<-*
                   p+C   
   mKIAA0646   471 PIC    473  

G-patch: domain 1 of 1, from 556 to 600: score 57.9, E = 2.2e-13
                   *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdraGLGae<-
                      ++++ ++l++KMG++eG+GLGk +qG+k+ +e+  +++r+GLG    
   mKIAA0646   556    YNSVSQRLMAKMGFREGEGLGKYSQGRKDIVETSNQKGRRGLGLT   600  

                   *
                    
   mKIAA0646     -   -    

//