hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg06261/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0644 ( 837 res) mbg06261 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 194.0 1.4e-53 11 LRR_PS Leucine-rich repeat, plant-specific subfamil 40.4 2.4e-07 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_PS 1/8 141 164 .. 1 24 [] 6.2 1.9e+02 LRR_TYP 1/11 141 164 .. 1 24 [] 33.0 4e-05 LRR_PS 2/8 165 188 .. 1 24 [] 8.4 98 LRR_TYP 2/11 165 188 .. 1 24 [] 23.3 0.034 LRR_TYP 3/11 189 212 .. 1 24 [] 18.2 1.2 LRR_PS 3/8 213 235 .. 1 24 [] 2.6 5.5e+02 LRR_TYP 4/11 213 236 .. 1 24 [] 20.2 0.29 LRR_TYP 5/11 237 260 .. 1 24 [] 24.1 0.02 LRR_PS 4/8 261 284 .. 1 24 [] 1.8 7e+02 LRR_TYP 6/11 261 286 .. 1 24 [] 4.2 1.3e+02 LRR_PS 5/8 287 310 .. 1 24 [] 2.1 6.3e+02 LRR_TYP 7/11 287 310 .. 1 24 [] 26.0 0.0053 LRR_PS 6/8 311 334 .. 1 24 [] 9.8 64 LRR_TYP 8/11 311 334 .. 1 24 [] 30.6 0.00021 LRR_PS 7/8 335 357 .. 1 24 [] 11.0 45 LRR_TYP 9/11 335 358 .. 1 24 [] 18.7 0.84 LRR_PS 8/8 359 382 .. 1 24 [] 12.6 28 LRR_TYP 10/11 359 382 .. 1 24 [] 31.1 0.00016 LRR_TYP 11/11 384 406 .. 1 24 [] 12.3 13 Alignments of top-scoring domains: LRR_PS: domain 1 of 8, from 141 to 164: score 6.2, E = 1.9e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++LdL++N++ P+++ + mKIAA0644 141 LGQLRRLDLQYNQIRSLHPKTFEK 164 LRR_TYP: domain 1 of 11, from 141 to 164: score 33.0, E = 4e-05 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++Lr+LdL++Nq++sL+p +F+ mKIAA0644 141 LGQLRRLDLQYNQIRSLHPKTFEK 164 LRR_PS: domain 2 of 8, from 165 to 188: score 8.4, E = 98 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L++L+L nN L +P +l mKIAA0644 165 LSRLEELYLGNNLLQALVPGTLAP 188 LRR_TYP: domain 2 of 11, from 165 to 188: score 23.3, E = 0.034 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ L+eL+L+nN L++L pg++++ mKIAA0644 165 LSRLEELYLGNNLLQALVPGTLAP 188 LRR_TYP: domain 3 of 11, from 189 to 212: score 18.2, E = 1.2 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++Lr L+ ++N + +L +g F+g mKIAA0644 189 LRKLRILYANGNEIGRLSRGSFEG 212 LRR_PS: domain 3 of 8, from 213 to 235: score 2.6, E = 5.5e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L sL+ L+L +N L +P+ + mKIAA0644 213 LESLVKLRLDGNVLG-ALPDAVFA 235 LRR_TYP: domain 4 of 11, from 213 to 236: score 20.2, E = 0.29 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L +L+L++N L +LP+ +F++ mKIAA0644 213 LESLVKLRLDGNVLGALPDAVFAP 236 LRR_TYP: domain 5 of 11, from 237 to 260: score 24.1, E = 0.02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL L+L++N+++ L +aF+ mKIAA0644 237 LGNLLYLHLESNRIRFLGKNAFSQ 260 LRR_PS: domain 4 of 8, from 261 to 284: score 1.8, E = 7e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++L+Ls N L ++ mKIAA0644 261 LGKLRFLNLSANELQPSLRHAATF 284 LRR_TYP: domain 6 of 11, from 261 to 286: score 4.2, E = 1.3e+02 *->LpnLreLdLsnNqL.tsLP.pgaFqg<-* L++Lr L+Ls N L+ sL ++ +F + mKIAA0644 261 LGKLRFLNLSANELqPSLRhAATFVP 286 [output cut off at A = 10 top alignments] //