hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg06261/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0644 ( 837 res) mbg06261 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_1 Leucine Rich Repeat 111.7 1.4e-29 11 LRRNT Leucine rich repeat N-terminal domain 20.5 0.04 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRRNT 1/1 85 113 .. 1 34 [] 20.5 0.04 LRR_1 1/11 143 166 .. 1 25 [] 17.9 0.24 LRR_1 2/11 167 190 .. 1 25 [] 12.9 7.5 LRR_1 3/11 191 214 .. 1 25 [] 12.1 13 LRR_1 4/11 215 238 .. 1 25 [] 12.3 12 LRR_1 5/11 239 262 .. 1 25 [] 10.7 33 LRR_1 6/11 263 288 .. 1 25 [] 7.0 1.4e+02 LRR_1 7/11 289 312 .. 1 25 [] 13.8 4.1 LRR_1 8/11 313 336 .. 1 25 [] 11.9 15 LRR_1 9/11 337 360 .. 1 25 [] 12.1 13 LRR_1 10/11 361 384 .. 1 25 [] 14.9 2 LRR_1 11/11 385 408 .. 1 25 [] 13.2 6.2 Alignments of top-scoring domains: LRRNT: domain 1 of 1, from 85 to 113: score 20.5, E = 0.04 *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-* Cp +C C + +++ C++rgL+ avP++ + mKIAA0644 85 VCPERCDCQH----PQHLLCTNRGLR-AVPKTSS 113 LRR_1: domain 1 of 11, from 143 to 166: score 17.9, E = 0.24 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L+ LdL++ N ++ +sl+p ++++l+ mKIAA0644 143 QLRRLDLQY-N-QI-RSLHPKtFeKLS 166 LRR_1: domain 2 of 11, from 167 to 190: score 12.9, E = 7.5 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +LeeL+L++ N l+ l p++l l+ mKIAA0644 167 RLEELYLGN-N-LLQ-ALVPGtLaPLR 190 LRR_1: domain 3 of 11, from 191 to 214: score 12.1, E = 13 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L++L+ +g N ++ g l+ ++++gl mKIAA0644 191 KLRILYANG-N-EI-GRLSRGsFeGLE 214 LRR_1: domain 4 of 11, from 215 to 238: score 12.3, E = 12 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L +L+L+g N l g lp+ + l mKIAA0644 215 SLVKLRLDG-N-VL-GALPDAvFaPLG 238 LRR_1: domain 5 of 11, from 239 to 262: score 10.7, E = 33 *->nLeeLdLsgCNpslsgslpps.l.glp<-* nL +L+L++ N ++ + l +++++ l mKIAA0644 239 NLLYLHLES-N-RI-RFLGKNaFsQLG 262 LRR_1: domain 6 of 11, from 263 to 288: score 7.0, E = 1.4e+02 *->nLeeLdLsgCNpslsgs..lpps.l.glp<-* +L+ L+Ls N +l+ ++ ++ ++ l+ mKIAA0644 263 KLRFLNLSA-N-ELQ-PslRHAAtFvPLR 288 LRR_1: domain 7 of 11, from 289 to 312: score 13.8, E = 4.1 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L +L Ls N sl+ +l p +++lp mKIAA0644 289 SLSTLILSA-N-SLQ-HLGPRvFqHLP 312 LRR_1: domain 8 of 11, from 313 to 336: score 11.9, E = 15 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L L+Lsg N +l+ +l+p+++ gl mKIAA0644 313 RLGLLSLSG-N-QLT-HLAPEaFwGLE 336 LRR_1: domain 9 of 11, from 337 to 360: score 12.1, E = 13 *->nLeeLdLsgCNpslsgslpps.l.glp<-* L+eL+L+g N +l+ lp l+ l mKIAA0644 337 ALRELRLEG-N-RLN-QLPLTlLePLH 360 LRR_1: domain 10 of 11, from 361 to 384: score 14.9, E = 2 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +Le LdLsg N +ls l+p ++++ mKIAA0644 361 SLEALDLSG-N-ELS-ALHPAtFgHQG 384 LRR_1: domain 11 of 11, from 385 to 408: score 13.2, E = 6.2 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L+eL+L++ N ls l+ + + p mKIAA0644 385 RLRELSLRD-N-ALS-ALSGDiFaASP 408 //