hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj04359/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0640  ( 591 res)   mpj04359

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     81.7    9.2e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1     217   314 ..     1    82 []    81.7  9.2e-20

Alignments of top-scoring domains:
PH: domain 1 of 1, from 217 to 314: score 81.7, E = 9.2e-20
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk...kpkgsipLs
                      v+k+G+++kk++++++w++r+fvL+++ ++yy s++ +++kg i L+
   mKIAA0640   217    VLKQGYMMKKGhkRkNWTERWFVLKPNIISYYVSEdlkDKKGDILLD 263  

                   gcsvre.p........cFeivt.drtlllqAeseeereeWvealqsaiak
                   +  ++e+ +++++++  F i++ d+t++++A++++ ++eW++a+ s i+ 
   mKIAA0640   264 ENCCVEsLpdkdgkkcLFLIKCfDKTFEISASDKKKKQEWIQAIYSTIHL 313  

                   a<-*
                   +   
   mKIAA0640   314 L    314  

//