hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg16237/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0639 ( 810 res) mbg16237 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CAP_GLY CAP-Gly domain 118.6 1.2e-31 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CAP_GLY 1/1 686 751 .. 1 74 [] 118.6 1.2e-31 Alignments of top-scoring domains: CAP_GLY: domain 1 of 1, from 686 to 751: score 118.6, E = 1.2e-31 *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN G+ V vg +++G+VRY+G+tdf++Gt W+GVELD P GKN mKIAA0639 686 EGEYVVVGT----NKTGIVRYIGPTDFQEGT--WIGVELDLPA-GKN 725 DGsvkGvrYFqCegpkyGiFvrpskve<-* DGs++G++YF C p+yG++vrps+v+ mKIAA0639 726 DGSIGGKQYFRCN-PGYGLLVRPSRVR 751 //