hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10346/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0638  ( 1386 res)   mbg10346

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     71.8    8.2e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1    1266  1381 ..     1    82 []    71.8  8.2e-17

Alignments of top-scoring domains:
PH: domain 1 of 1, from 1266 to 1381: score 71.8, E = 8.2e-17
                   *->vikeGwLlkks..k.swkkryfvLfn..gvLlyyksk...kpkgsip
                       +++G+L k++++ +swkkr+fv+++ +++L+yy +k+++k+kg+i 
   mKIAA0638  1266    KVCRGYLIKMGgkIkSWKKRWFVFDRlkRTLSYYVDKhetKLKGVIY 1312 

                   Lsgc.svre.p.......................cFeivt.drtlllqAe
                    + +++v+ ++ ++  +++  +     +++++  +F+++t+dr +++ A+
   mKIAA0638  1313 FQAIeEVYYdHlrsaakkrffhftmvtespnpalTFCVKThDRLYYMVAP 1362 

                   seeereeWvealqsaiaka<-*
                   s+e ++ W++ +   ++ +   
   mKIAA0638  1363 SAEAMRIWMDVIVTGAEGY    1381 

//