hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01921/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0637  ( 1165 res)   mbg01921

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-BED   BED zinc finger                                259.4    4.9e-74   4
hATC     hAT family dimerisation domain                  20.0     0.0017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-BED     1/4     121   169 ..     1    52 []    69.4  7.7e-17
zf-BED     2/4     291   339 ..     1    52 []    68.5  1.4e-16
zf-BED     3/4     463   510 ..     1    52 []    73.3  5.2e-18
zf-BED     4/4     557   605 ..     1    52 []    69.5    7e-17
hATC       1/1    1078  1158 ..     1    94 []    20.0   0.0017

Alignments of top-scoring domains:
zf-BED: domain 1 of 4, from 121 to 169: score 69.4, E = 7.7e-17
                   *->SkvWkhFtkveeeedgkevegkakCkhCgkklsrkk...ksGTsnLi
                      S++WkhF +   ++d++    ka+C +C+k++sr+k++++ +Ts+L+
   mKIAA0637   121    SPAWKHFFIS--PRDST----KAICTYCMKEFSRGKnekDLSTSCLM 161  

                   rHLrrkHp<-*
                   rH rr Hp   
   mKIAA0637   162 RHVRRAHP    169  

zf-BED: domain 2 of 4, from 291 to 339: score 68.5, E = 1.4e-16
                   *->SkvWkhFtkveeeedgkevegkakCkhCgkklsrkk...ksGTsnLi
                      S vWkhF++   + d++    ka+C hC++++sr+k++++ GTs+Li
   mKIAA0637   291    SAVWKHFYLS--PLDSS----KAVCVHCMNEFSRGKngkDLGTSCLI 331  

                   rHLrrkHp<-*
                   rH++r H+   
   mKIAA0637   332 RHMWRAHR    339  

zf-BED: domain 3 of 4, from 463 to 510: score 73.3, E = 5.2e-18
                   *->SkvWkhFtkveeeedgkevegkakCkhCgkklsrkk..ksGTsnLir
                      S+vW+hF++   ++d+     ka+C++C +++sr+k+++ GTs+L+r
   mKIAA0637   463    SEVWHHFSLA--PMDSL----KAVCRYCSCVISRGKkgDVGTSCLMR 503  

                   HLrrkHp<-*
                   HL r+Hp   
   mKIAA0637   504 HLYRRHP    510  

zf-BED: domain 4 of 4, from 557 to 605: score 69.5, E = 7e-17
                   *->SkvWkhFtkveeeedgkevegkakCkhCgkklsrkk...ksGTsnLi
                      Sk+W+hF+++  ++d++    k++C+hCg+++sr+k++++ GTs+L 
   mKIAA0637   557    SKLWNHFSIC--SADST----KVVCLHCGRTISRGKkptNLGTSCLL 597  

                   rHLrrkHp<-*
                   rHL+r+H    
   mKIAA0637   598 RHLQRFHG    605  

hATC: domain 1 of 1, from 1078 to 1158: score 20.0, E = 0.0017
                   *->ELdkYlselpvlprnteprgledfdvLeWWkeaqnssryPiLsklAr
                       +  Yl+e +vl+ +         d+L +W   +++s+ P Ls lA 
   mKIAA0637  1078    MVLAYLEE-EVLEHS--------CDPLTYWN--LKRSSWPGLSTLAV 1113 

                   diLsiPvssaasErsFStgklgrvldesrnrlepenveaLlcledwl<-*
                   + L +P s++ sE+ FSt       +  + rl  e+ e+L++l+ +l   
   mKIAA0637  1114 RFLGCPPSTVPSEKLFSTP--MDAGSFGQPRLMMEHFEKLIFLKVNL    1158 

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