hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mkg/mkg04101/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0636  ( 560 res)   mkg04101

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     106.6    2.8e-27   2
VWA      von Willebrand factor (vWF) type A domain       74.5    1.3e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2      34   141 ..     1    92 []    50.7  1.9e-10
C2         2/2     166   272 ..     1    92 []    57.5  1.7e-12
VWA        1/1     316   522 ..     1   193 []    74.5  1.3e-17

Alignments of top-scoring domains:
C2: domain 1 of 2, from 34 to 141: score 50.7, E = 1.9e-10
                   *->tLtvkiisArnLp........DPYVkvs............kTkvvkk
                      t     +s++nL + + ++++DP ++++ ++++++     +T+ +k+
   mKIAA0636    34    TKVELNVSCNNLLdadvtsksDPLCVLFlntsghqwyeveRTERIKN 80   

                   tlsgfNPvWnEesetFeFevpp...s.LeieVyDk..........dfiGr
                   +l   NP++     tF+++   +  ++L++ +yD ++++ + +++df+G+
   mKIAA0636    81 SL---NPKFSK---TFVIDYYFevvQkLKFGIYDIdnktielsddDFLGE 124  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   +++               l ++ ++ + ++    
   mKIAA0636   125 CEVT--------------LGQIVsSKKLtRP    141  

C2: domain 2 of 2, from 166 to 272: score 57.5, E = 1.7e-12
                   *->tLtvkiisArnLp........DPYVkvs............kTkvvkk
                      ++ +  ++Ar L +++  +++DPY ++++++++++    ++T+v+k+
   mKIAA0636   166    RVVLFEMEARKLDnkdlfgksDPYLEFHkqtsdghwlmvhRTEVIKN 212  

                   tlsgfNPvWnEesetFeFevpp.......s.LeieVyDk......dfiGr
                   +l   NP W      F++++++   ++ ++++++e+yD+++++++d+iG+
   mKIAA0636   213 NL---NPMWK----PFKISLNSlcygdmdKtIKVECYDYdndgshDLIGT 255  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++                +++l++  r+++    
   mKIAA0636   256 FQTT--------------MTKLKeASRSsPV    272  

VWA: domain 1 of 1, from 316 to 522: score 74.5, E = 1.3e-17
                   *->plDvvfllDgSgSmg...............gnrfekvkefv.klveq
                      +l++++ +D +gS g+++++++ +  ++++ n + +++  v+ ++++
   mKIAA0636   316    QLNFTVGVDFTGSNGdpsspdslhyispngVNEYLTAIWSVgLVIQD 362  

                   ld.gdrvglvqFss......dvrvefpln.......sqskdallealasl
                    d +  + + +F+ + +++ +v +efp+n +++++ ++  + ++ea +  
   mKIAA0636   363 YDaDKMFPAFGFGAqvppqwQVSHEFPMNfnpsnpyCNGIQGIVEAYRTC 412  

                   sykglkdyslgggTnlg.ALqyalenlfsesag.rrgagratkiSnvpkv
                    +    +++l+g+Tn+ + ++++++ + ++++ + +             v
   mKIAA0636   413 LP----QIRLYGPTNFSpIINHVARFAAAATQQqTASQ---------YFV 449  

                   liliTDGesndggddpedileaakelkrsgvkvfvigvgnade.elkeia
                   l++iTDG  +    d++++++a+ ++ +   +++++gvg+ad++ ++ ++
   mKIAA0636   450 LLIITDGVIT----DLDETRQAIVNAAKLPMSIIIVGVGGADFsAMEFLD 495  

                   sep.gehvffdvsdvedlpslldllidlll<-*
                   +++++++++   s  ++ +++++ +  +++   
   mKIAA0636   496 GDGgSLRAP---SGEVAIRDIVQFVPFRQF    522  

//