hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mkg/mkg04101/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0636  ( 560 res)   mkg04101

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Copine   Copine                                         339.2    4.5e-98   1
C2       C2 domain                                      127.6    2.2e-34   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2      36   126 ..     1    88 []    57.4  3.1e-13
C2         2/2     167   257 ..     1    88 []    72.9  6.9e-18
Copine     1/1     337   484 ..     1   160 []   339.2  4.5e-98

Alignments of top-scoring domains:
C2: domain 1 of 2, from 36 to 126: score 57.4, E = 3.1e-13
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqk...kkTkvik
                      ++++v +++nL   D +++ksDP ++++l+  +  q+ +  +T+ ik
   mKIAA0636    36    VELNV-SCNNLLDAD-VTSKSDPLCVLFLNTSGH-QWyevERTERIK 79   

                   ktlNPvWNEtFtFevpppdlqetLeieVyDydrfgr....ddflGevs<-
                   ++lNP++  tF+++  ++ +q+ L++ +yD d ++ + ++ddflGe++  
   mKIAA0636    80 NSLNPKFSKTFVIDYYFEVVQK-LKFGIYDIDNKTIelsdDDFLGECE   126  

                   *
                    
   mKIAA0636     -   -    

C2: domain 2 of 2, from 167 to 257: score 72.9, E = 6.9e-18
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqk...kkTkvik
                      +++  +eA+ L +kD ++gksDPY +++    ++ ++   ++T+vik
   mKIAA0636   167    VVLFEMEARKLDNKD-LFGKSDPYLEFHKQTSDG-HWlmvHRTEVIK 211  

                   ktlNPvWN.EtFtFe.vpppdlqetLeieVyDydrfgrddflGevs<-*
                   ++lNP W + +  ++++ + d+++t+++e+yDyd +g++d++G+++   
   mKIAA0636   212 NNLNPMWKpFKISLNsLCYGDMDKTIKVECYDYDNDGSHDLIGTFQ    257  

Copine: domain 1 of 1, from 337 to 484: score 339.2, E = 4.5e-98
                   *->SLHyIspyqpNpYeqAiravGeiLqdYDsDklfpayGFGAkiPpdys
                      SLHyIsp+ +N+Y++Ai++vG ++qdYD+Dk+fpa+GFGA++Pp+++
   mKIAA0636   337    SLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQ 383  

                   vshdedvFpLnfnpedpeCnGieGVleaYrealpnvqLsGPTnFaPiIna
                   vsh+   Fp+nfnp++p+CnGi+G++eaYr++lp+++L+GPTnF+PiIn+
   mKIAA0636   384 VSHE---FPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPIINH 430  

                   aariAeas.saqeggqYhVLlIiTDGqvtRsvDteGLSpDmkeTvdAIVs
                   +ar+A+a++++q+++qY+VLlIiTDG++t          D+ eT++AIV+
   mKIAA0636   431 VARFAAAAtQQQTASQYFVLLIITDGVIT----------DLDETRQAIVN 470  

                   ASklPLSIiiVGVG<-*
                   A+klP+SIiiVGVG   
   mKIAA0636   471 AAKLPMSIIIVGVG    484  

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