hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg20639/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0634  ( 1485 res)   mbg20639

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
fn3      Fibronectin type III domain                     14.6      0.057   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
fn3        1/1    1212  1328 ..     1    84 []    14.6    0.057

Alignments of top-scoring domains:
fn3: domain 1 of 1, from 1212 to 1328: score 14.6, E = 0.057
                   *->PsaPtnltvtdv.tstsltlsWsppt..gngpitgYevtyRqpkngg
                      P ++ +l+ t  ++st ++l+W    +  + +++ Y ++  +++++ 
   mKIAA0634  1212    PQPVLRLSPTVEpSSTVVSLEWVDVQpaIGTKVSDYILQH-KKVDEY 1257 

                   e............................wneltvpgttt.sytltgLkP
                    +++  +++  +  ++  ++ +++    +  +  vp ++  s++++ L+P
   mKIAA0634  1258 TdtdlytgeflsfaddllsglgtscvaagRSHGEVPEVSIySVIFKCLEP 1307 

                   gteYevrVqAvnggG..GpeS<-*
                   +  Y+++++Av+++G++++ S   
   mKIAA0634  1308 DGLYKFTLYAVDTRGrhSELS    1328 

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