hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06737/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0633  ( 1334 res)   mbg06737

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WH2      Wiskott Aldrich syndrome homology region 2      63.2    3.2e-14   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WH2        1/3    1182  1202 ..     1    19 []    17.2      2.4
WH2        2/3    1222  1242 ..     1    19 []    24.9    0.011
WH2        3/3    1310  1330 ..     1    19 []    25.6   0.0067

Alignments of top-scoring domains:
WH2: domain 1 of 3, from 1182 to 1202: score 17.2, E = 2.4
                   *->aRsaLLaqIr..gqGkkLKKv<-*
                       +saL+++I+++g+  kL+K+   
   mKIAA0633  1182    LHSALMEAIHssGGREKLRKT    1202 

WH2: domain 2 of 3, from 1222 to 1242: score 24.9, E = 0.011
                   *->aRsaLLaqIr..gqGkkLKKv<-*
                       RsaLLa+Ir++++  +L+Kv   
   mKIAA0633  1222    ERSALLAAIRghSGTLSLRKV    1242 

WH2: domain 3 of 3, from 1310 to 1330: score 25.6, E = 0.0067
                   *->aRsaLLaqIr..gqGkkLKKv<-*
                      aR+aL+++Ir++++ ++L+Kv   
   mKIAA0633  1310    ARQALMDAIRsgTGAARLRKV    1330 

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