hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbj/mbj00361/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0631 ( 724 res) mbj00361 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- AMP-binding AMP-binding enzyme 288.9 6.3e-83 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- AMP-binding 1/1 134 599 .. 1 377 [] 288.9 6.3e-83 Alignments of top-scoring domains: AMP-binding: domain 1 of 1, from 134 to 599: score 288.9, E = 6.3e-83 *->TYrELderanrlAaaLralGvgpGdrVaillpnspelvvailAvlka +Y + + a+++A ++++lG+++ Vail nspe+ + + a mKIAA0631 134 SYYQYYLIARKVAKGFLKLGLERAHSVAILGFNSPEWFFSAVGTVFA 180 GaayvPldpsypaerlayiledsgakvlltddalla.l............ G+++ ++++ ++e+ +yi d++a v+++d + + + + ++ + + mKIAA0631 181 GGIVTGIYTTSSPEACQYISHDCRANVIVVDTQKQLeKilkiwkdlphlk 230 ................................s.e.p.ppvdpddlAyii +++ ++++++ + + + ++ + + ++++++ + +p++ +++ mKIAA0631 231 avviyqepppkkmanvytmeelielgqevpeeAlDaIiDTQQPNQCCVLV 280 YTSGTTGkPKGVmltHrnlvnlvaala.rf.l.pdd..aervllllppll YTSGTTG+PKGVml++ n+++ ++ + +++p + e+v ++lp l mKIAA0631 281 YTSGTTGNPKGVMLSQDNITWIARYGSqAGdIqPAEvqQEVVVSYLP-LS 329 hfdgsvweifgpLlaGatlvlvpkfdryrdpealldliekykvTvlflvP h+++ ++++++ + Ga++++++++ + ++l+ ++++ +T ++vP mKIAA0631 330 HIAAQIYDLWTGIQWGAQVCFADPDAL---KGTLVNTLREVEPTSHMGVP 376 tllrlllkape...edlssLrlvlsgGealppelarrlrerfgs...... ++++ +++ +++ + +r+ ++ + ++++l + l ++s++ ++ mKIAA0631 377 RVWEKIMERIQevaAQSGFIRRKMLLWA-MSVTLEQNLT--CPSndlkpf 423 ..........................................ggvrlvng +++ + + + + + ++ + + + + + + ++rl+ g mKIAA0631 424 tsrladylvlarvrqalgfakcqknfygaapmtaetqrfflgLNIRLYAG 473 YGpTEttvvatanppg.p.pgsiGrPlpgvevyvlDeegqpvppGvvGEL YG++E+t+ +++ p + + s Gr +pg++v++++++ +GE+ mKIAA0631 474 YGLSESTGPHFMSSPYnYrLYSSGRVVPGCRVKLVNQD-----ADGIGEI 518 yirGwpgvarGYlnrPelTaerFvadgwgpGeRmYrTGDlgrwdpDGyle ++ G +++GYln +++T e+++++gw ++TGD+gr+d+DG+l+ mKIAA0631 519 CLWG-RTIFMGYLNMEDKTCEAIDSEGW------LHTGDMGRLDADGFLY 561 ilGRkDdqvKi.rGerIepgEiEavLl.ahPgVaeAaV<-* i+GR++++++ +Ge++ p iE+++ ++P + A mKIAA0631 562 ITGRLKELIITaGGENVPPVPIEEAVKmELPIISSAML 599 //