hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/msj/msj08164/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0628 ( 508 res) msj08164 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 247.4 1.2e-69 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/12 128 150 .. 1 23 [] 28.1 0.0012 ZnF_C2H2 2/12 156 178 .. 1 23 [] 17.3 2.2 ZnF_C2H2 3/12 184 206 .. 1 23 [] 25.9 0.0054 ZnF_C2H2 4/12 212 234 .. 1 23 [] 27.9 0.0014 ZnF_C2H2 5/12 240 262 .. 1 23 [] 30.1 0.0003 ZnF_C2H2 6/12 268 290 .. 1 23 [] 30.2 0.00029 ZnF_C2H2 7/12 296 318 .. 1 23 [] 26.9 0.0028 ZnF_C2H2 8/12 324 346 .. 1 23 [] 28.8 0.00073 ZnF_C2H2 9/12 352 374 .. 1 23 [] 25.5 0.0076 ZnF_C2H2 10/12 380 402 .. 1 23 [] 28.2 0.0011 ZnF_C2H2 11/12 408 430 .. 1 23 [] 22.6 0.056 ZnF_C2H2 12/12 436 458 .. 1 23 [] 28.6 0.00087 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 12, from 128 to 150: score 28.1, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ + L++H+rvH mKIAA0628 128 YKCDH-CGKGFSQTsLLTEHQRVH 150 ZnF_C2H2: domain 2 of 12, from 156 to 178: score 17.3, E = 2.2 *->ykCpigCgksfssk.aLkrHmrvH<-* +C++ Cgk f ++ +L++H+ vH mKIAA0628 156 CVCHV-CGKDFVHYaSLREHQHVH 178 ZnF_C2H2: domain 3 of 12, from 184 to 206: score 25.9, E = 0.0054 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cgk f++ ++L rH+rvH mKIAA0628 184 FKCAQ-CGKAFCHSsDLLRHQRVH 206 ZnF_C2H2: domain 4 of 12, from 212 to 234: score 27.9, E = 0.0014 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk fs+ + L+rH+r+H mKIAA0628 212 FECKE-CGKGFSQSsLLIRHQRIH 234 ZnF_C2H2: domain 5 of 12, from 240 to 262: score 30.1, E = 0.0003 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf + ++L+rH+++H mKIAA0628 240 YECNE-CGKSFIRSsSLIRHYQIH 262 ZnF_C2H2: domain 6 of 12, from 268 to 290: score 30.2, E = 0.00029 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C Cgk f+++++L++H+r+H mKIAA0628 268 YECRD-CGKAFRHRsDLIEHQRIH 290 ZnF_C2H2: domain 7 of 12, from 296 to 318: score 26.9, E = 0.0028 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f + + L++H+r+H mKIAA0628 296 FECQE-CGKAFIRSsKLIQHQRIH 318 ZnF_C2H2: domain 8 of 12, from 324 to 346: score 28.8, E = 0.00073 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs+ +++++H+r+H mKIAA0628 324 YVCNE-CGKRFSQTsNFTQHQRIH 346 ZnF_C2H2: domain 9 of 12, from 352 to 374: score 25.5, E = 0.0076 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + L+rH+++H mKIAA0628 352 YECNE-CGKAFFLSsYLIRHQKIH 374 ZnF_C2H2: domain 10 of 12, from 380 to 402: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f +k +L++H+++H mKIAA0628 380 YECKE-CGKAFLQKaHLTEHQKIH 402 [output cut off at A = 10 top alignments] //