hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj08164/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0628  ( 508 res)   msj08164

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         334.0    1.6e-96  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/12    128   150 ..     1    24 []    35.4  1.3e-06
zf-C2H2    2/12    156   178 ..     1    24 []    22.2    0.012
zf-C2H2    3/12    184   206 ..     1    24 []    33.8    4e-06
zf-C2H2    4/12    212   234 ..     1    24 []    38.7  1.4e-07
zf-C2H2    5/12    240   262 ..     1    24 []    36.4  6.7e-07
zf-C2H2    6/12    268   290 ..     1    24 []    37.3  3.6e-07
zf-C2H2    7/12    296   318 ..     1    24 []    35.8    1e-06
zf-C2H2    8/12    324   346 ..     1    24 []    37.4  3.2e-07
zf-C2H2    9/12    352   374 ..     1    24 []    32.8  7.7e-06
zf-C2H2   10/12    380   402 ..     1    24 []    33.7  4.4e-06
zf-C2H2   11/12    408   430 ..     1    24 []    31.5    2e-05
zf-C2H2   12/12    436   458 ..     1    24 []    33.8  3.9e-06

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 12, from 128 to 150: score 35.4, E = 1.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk Fs+ s L+ H+r+H   
   mKIAA0628   128    YKCD-HCGKGFSQTSLLTEHQRVH    150  

zf-C2H2: domain 2 of 12, from 156 to 178: score 22.2, E = 0.012
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk F + ++L+ H+ +H   
   mKIAA0628   156    CVCH-VCGKDFVHYASLREHQHVH    178  

zf-C2H2: domain 3 of 12, from 184 to 206: score 33.8, E = 4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC  +Cgk+F+++s+L rH+r+H   
   mKIAA0628   184    FKCA-QCGKAFCHSSDLLRHQRVH    206  

zf-C2H2: domain 4 of 12, from 212 to 234: score 38.7, E = 1.4e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk Fs++s L rH+r+H   
   mKIAA0628   212    FECK-ECGKGFSQSSLLIRHQRIH    234  

zf-C2H2: domain 5 of 12, from 240 to 262: score 36.4, E = 6.7e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +CgksF r+s+L rH ++H   
   mKIAA0628   240    YECN-ECGKSFIRSSSLIRHYQIH    262  

zf-C2H2: domain 6 of 12, from 268 to 290: score 37.3, E = 3.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  dCgk+F+++s+L  H+r+H   
   mKIAA0628   268    YECR-DCGKAFRHRSDLIEHQRIH    290  

zf-C2H2: domain 7 of 12, from 296 to 318: score 35.8, E = 1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+F r+s L +H+r+H   
   mKIAA0628   296    FECQ-ECGKAFIRSSKLIQHQRIH    318  

zf-C2H2: domain 8 of 12, from 324 to 346: score 37.4, E = 3.2e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs+ sn+++H+r+H   
   mKIAA0628   324    YVCN-ECGKRFSQTSNFTQHQRIH    346  

zf-C2H2: domain 9 of 12, from 352 to 374: score 32.8, E = 7.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F  +s L rH+++H   
   mKIAA0628   352    YECN-ECGKAFFLSSYLIRHQKIH    374  

zf-C2H2: domain 10 of 12, from 380 to 402: score 33.7, E = 4.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F +k++L+ H+++H   
   mKIAA0628   380    YECK-ECGKAFLQKAHLTEHQKIH    402  

zf-C2H2: domain 11 of 12, from 408 to 430: score 31.5, E = 2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ dCgk+F ++s L  H+ +H   
   mKIAA0628   408    FECK-DCGKAFIQSSKLLLHQIVH    430  

zf-C2H2: domain 12 of 12, from 436 to 458: score 33.8, E = 3.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk F ++sn+ +H+++H   
   mKIAA0628   436    YVCS-YCGKGFIQRSNFLQHQKMH    458  

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