hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10563/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0626  ( 350 res)   mbg10563

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IGc2     Immunoglobulin C-2 Type                         47.8    1.4e-09   1
IG       Immunoglobulin                                  36.6    3.3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IGc2       1/1       1    73 [.     1    56 []    47.8  1.4e-09
IG         1/1       1    84 [.     1    58 []    36.6  3.3e-06

Alignments of top-scoring domains:
IGc2: domain 1 of 1, from 1 to 73: score 47.8, E = 1.4e-09
                   *->leGqsVtLtCpasgdpvpnItWlk..gkplp................
                       eG s+ ++C a g+p+ +++W+ + gk l + ++++++++++ +  
   mKIAA0626     1    -EGSSALINCSAYGFPDLEFKWYNsvGKLLKemddekekgggkwqml 46   

                   sgstLtiknvsleDsGlYtCvArNsvg<-*
                   +g+ L+i+ vs++D+G+YtCvA+N  g   
   mKIAA0626    47 DGGLLNITKVSFSDRGKYTCVASNIYG    73   

IG: domain 1 of 1, from 1 to 84: score 36.6, E = 3.3e-06
                   *->ppvtvkeGesvtLtC.as.....titWy...................
                            eG+s+ ++C+a + ++ +++Wy++ ++  +  ++ + ++++
   mKIAA0626     1    ------EGSSALINCsAYgfpdlEFKWYnsvgkllkemddekekggg 41   

                   .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-
                   + +  +++ L+I++v+++D    G YtC+a++ +g++    ++tL+V   
   mKIAA0626    42 kwqmldgglLNItKVSFSDR---GKYTCVASniYGTINN--TVTLRVI   84   

                   *
                    
   mKIAA0626     -   -    

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