hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10563/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0626  ( 350 res)   mbg10563

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ig       Immunoglobulin domain                           39.1    9.7e-08   1
I-set    Immunoglobulin I-set domain                     24.6    0.00013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ig         1/1       2    68 ..     1    65 []    39.1  9.7e-08
I-set      1/1       1    84 [.     1    97 []    24.6  0.00013

Alignments of top-scoring domains:
ig: domain 1 of 1, from 2 to 68: score 39.1, E = 9.7e-08
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+s+ ++Cs+   g pd ++ W+   ++l ++++      +g+++  
   mKIAA0626     2    GSSALINCSA--YGFPDLEFKWYNSVGkLLkEMDDEKEKGGGKWQML 46   

                   t..sLtitnvtpeDggtYtCvv<-*
                   ++++L+it+v+ +D g YtCv+   
   mKIAA0626    47 DggLLNITKVSFSDRGKYTCVA    68   

I-set: domain 1 of 1, from 1 to 84: score 24.6, E = 0.00013
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssv..
                                   eG+sa   C ++G+P+ +  W+   G+ l++ ++
   mKIAA0626     1    -------------EGSSALINCSAYGFPDLEFKWYNSvGKLLKEMdd 34   

                   .l.lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasa
                   + +  +++ ++   g      L I +v  +D GkYtCvA+N +G+   ++
   mKIAA0626    35 eKeKGGGKWQMLDGG-----LLNITKVSFSDRGKYTCVASNIYGTINNTV 79   

                   eLtVq<-*
                   +L V    
   mKIAA0626    80 TLRVI    84   

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