hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01004/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0623 ( 1056 res) mbg01004 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase Protein kinase domain 291.1 1.4e-83 1 Pkinase_Tyr Protein tyrosine kinase 127.4 2.6e-34 1 Kdo Lipopolysaccharide kinase (Kdo/WaaP) fami -88.5 0.73 1 RIO1 RIO1 family -101.4 0.39 1 Extensin_2 Extensin-like region -132.4 0.26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RIO1 1/1 41 178 .. 1 203 [] -101.4 0.39 Kdo 1/1 24 187 .. 1 223 [] -88.5 0.73 Pkinase 1/1 28 290 .. 1 287 [] 291.1 1.4e-83 Pkinase_Tyr 1/1 28 290 .. 1 272 [] 127.4 2.6e-34 Extensin_2 1/1 263 617 .. 1 385 [] -132.4 0.26 Alignments of top-scoring domains: RIO1: domain 1 of 1, from 41 to 178: score -101.4, E = 0.39 *->nVYhAvsyaedgedptevAvK.iyrtgtteFkk.rkkYrdgdfRFrd +V+ ++ ++ + evA+K+i + ++ ++ k ++ + mKIAA0623 41 VVFRGRH-RQKTDW--EVAIKsINKKNLSKSQIlLGKEIKILKELQ- 83 rksktswrklvrlWAeKEfrNLkRLyeaGvpVPkPiavnrhv.LVMEfIg ++N ++Ly ++ + v LVME++ mKIAA0623 84 ------------------HENIVALYDVQ-------ELPNSVfLVMEYCN 108 dedGvpAPrLkdveleldlseeeaeelYdeiirEymrrlYkeagLVHGDL G ++ + + lse+ ++ +++i mr+l g++H DL mKIAA0623 109 ---GGDLADYLQAKGT--LSEDTIRVFLHQIAA-AMRILH-SKGIIHRDL 151 SEYNiLv.hddgkpviIDvsQaVetdHPnAlefLeRDieNIinFFrrkgv NiL+++ + rrk mKIAA0623 152 KPQNILLsYAN----------------------------------RRKSN 167 dkr.vvdvrel<-* + ++ + ++ mKIAA0623 168 VSGiRIKIADF 178 Kdo: domain 1 of 1, from 24 to 187: score -88.5, E = 0.73 *->defWqlqgkvvgeanGRrttwFvvaeklFGvngalrhYyRGglwgkL +f+ + + vg + + vv++ rh + ++ w+ mKIAA0623 24 GDFEYCKRDLVGHG-----AFAVVFRG--------RH-RQKTDWEVA 56 vrDryrfpGlgrtrsvr..EfrllrrLreaGvpVPkpvAagavkvglery +++ + l++ + ++E l++L + + +++ v + ++ mKIAA0623 57 IKS-INKKNLSKSQILLgkEIKILKELQHENIVALYDV--QELPNSVF-- 101 qAdLLtEklegaqDLvtwlaqWaddPpaeelrqalweavGrlIakmHrag L++E g DL+++l+ + ++e + +++++++ + +H+ g mKIAA0623 102 ---LVMEYCNG-GDLADYLQAKGT--LSEDTIRVFLHQIAAAMRILHSKG 145 vnHtDLnahnILldqeesvegkfkvwlIDfdKcrrrlrvgdrWreknLar + H+DL + nILl rr++ + ++ mKIAA0623 146 IIHRDLKPQNILLSYAN----------------RRKS--NVSGI------ 171 LkRSflKErGkrsigfteaDwaallrgY<-* +i++ + +a+ l mKIAA0623 172 ------------RIKIADFGFARYLHSN 187 Pkinase: domain 1 of 1, from 28 to 290: score 291.1, E = 1.4e-83 *->yelleklGsGsfGtVykakhkgtgk.iVAvKiikkrkekskkdktar y++ +G G+f++V++++h+ + +VA+K i+k++ ++++ + + mKIAA0623 28 YCKRDLVGHGAFAVVFRGRHRQKTDwEVAIKSINKKNLSKSQ-ILLG 73 rrsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdyls + Ei+ilk+L+H+NIv l+dv e ++++ lV+Eyc+gG dL dyl+ mKIAA0623 74 K--EIKILKELQHENIVALYDVQELPNSVFLVMEYCNGG----DLADYLQ 117 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldeng +kg+l sed+++ ++ Qi+ ++ LHs+giiHRDLKP+NILl+ + mKIAA0623 118 ---AKGTL--SEDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILLSYAN 162 vvda.....flKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggng +++ ++ ++KiaDFG+A+ ++s++ + t++G+p YmAPEv++ +++ mKIAA0623 163 RRKSnvsgiRIKIADFGFARY--LhSNTmAATLCGSPMYMAPEVIM-SQH 209 ygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefd y+ k+D WS+G ++y+ l GkpPF+ s+ d + ++k+++ ++++ mKIAA0623 210 YDAKADLWSIGTVIYQCLVGKPPFQAN---SpQDLRMFYEKNRSLMPSIP 256 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< ++++ + + L+ ++L+++ ++R +e + HP++ mKIAA0623 257 RETS---------------PYLANLLLGLLQRNQKDRMDFEAFFSHPFL 290 -* mKIAA0623 - - Pkinase_Tyr: domain 1 of 1, from 28 to 290: score 127.4, E = 2.6e-34 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtL.keigasseei + G+GaF +V++G+ + ++t+ +VA+K+++k+ + s + mKIAA0623 28 YCKRDLVGHGAFAVVFRGRHR---QKTDWEVAIKSInKK-NLSKS-- 68 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd + + +E++i+k+l +H+NiV L+ v + +++V+Ey+ gGd mKIAA0623 69 -QILLGKEIKILKEL-QHENIVALYDVQEL-PNS----VFLVMEYCNGGD 111 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L d+L++ ++ L+ + f +QiA++M L+sk+++HRDL N+L+ mKIAA0623 112 LADYLQA---KGTLSEDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILL 158 se........nl.vVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEs s ++++++ ++ +KI+DFG aR++ ++ + + + P mAPE+ mKIAA0623 159 SYanrrksnvSGiRIKIADFGFARYL--HSNT-MAATLCGSPM-YMAPEV 204 lkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRL ++ + k D WS G +++ + G++P ++ s+++ l ++ye+++ L mKIAA0623 205 IMSQHYDAKADLWSIGTVIYQCLV-GKPP-FQANSPQD-LRMFYEKNRSL 251 pr..PenCPdelYdlMlqCWaedPedRPtFsel..verL<-* ++ P+ +++ l +l l +++ +dR F++ ++ +L mKIAA0623 252 MPsiPRETSPYLANLLLGLLQRNQKDRMDFEAFfsHPFL 290 Extensin_2: domain 1 of 1, from 263 to 617: score -132.4, E = 0.26 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy l+ l++ l+ + + +s P + p v kS P P+p mKIAA0623 263 LANLLLGLLQRNQKDRMDFEAFFSHPFLEQVP-VKKSCPVPVP---- 304 kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPpPv vYs P P S +P+ mKIAA0623 305 ----------VYSGPVPG-----SSCSS-------------------SPS 320 ykYkSPP..PPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSPPP + SPP+ P + + +SPP p+ y S + k +S mKIAA0623 321 CRFASPPslPDM-QHIQEENLSSPPLGPPNYLQVSKDSASNSSKNSSCDT 369 PpyvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkkyiyksppppe + P + Y P + + + ++++ mKIAA0623 370 D--DFVLVPHNISS--DHSYDMPMGTT------ARRASNEFFMCGGQCQP 409 phkYvYkSPPPPpP..YvyesvpeqkikYvYkSPPPPkksYkspsp.pky ++ P P+P++ + eq+ +S P+ sp+ mKIAA0623 410 TVSPHSETAPIPVPtqVRNYQRIEQNLISTASSGTNPH-----GSPrSAV 454 VYkSpPpPvipykYk...SPPPPkkkyspaPrkpyvYkSPPPPtyvYkSp V +S P+ + ++ SP P + r + + P P++ mKIAA0623 455 VRRSNTSPM-GFLRVgscSPVPGDTVQTGGRRLSTGSSRPYSPSPLVGTI 503 PpPyk.............................pptppkiyksPPPPtP P + +++++++ +++++++++ ++++ +++ + +s P t mKIAA0623 504 PEQFSqcccghpqghearsrhssgspvpqtqapqSLLLGARLQSAPTLTD 553 vyvYkspPpippiksssppPvyvYkSpPppvysPPPPyvYssPPPPvyvy +y k + + S P + y Ys+ P + mKIAA0623 554 IYQNKQKLR-------------KQHSDPVCPSHAGAGYSYSPQPSRPGSL 590 nsaPvyk..ksPPkhhYiYsSPPPphh<-* +P +++sP + + P P mKIAA0623 591 GTSPTKHtgSSPRNSDWFFKTPLPTII 617 //