hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg10155/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0622 ( 791 res) mbg10155 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- HEAT HEAT repeat 46.2 7.5e-10 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- HEAT 1/5 183 220 .. 1 36 [] 3.2 86 HEAT 2/5 266 301 .. 1 36 [] 0.4 2.2e+02 HEAT 3/5 310 346 .. 1 36 [] 0.2 2.3e+02 HEAT 4/5 594 630 .. 1 36 [] 23.1 0.0068 HEAT 5/5 712 748 .. 1 36 [] 23.7 0.0044 Alignments of top-scoring domains: HEAT: domain 1 of 5, from 183 to 220: score 3.2, E = 86 *->e.lldellplllkllnDp.dpeVReaAaeaLgalaevl<-* + l++l +++ +++ Dp++ +V + +e+L++++ ++ mKIAA0622 183 RvELKRLCEIFTRMFADPhSKRVFSMFLETLVDFIIIH 220 HEAT: domain 2 of 5, from 266 to 301: score 0.4, E = 2.2e+02 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* +++ l+ ++++ + p+ +V+ a ++ + +la+++ mKIAA0622 266 QqFN-ILMRFIVDQTQTPNLKVKVAILKYIESLARQM 301 HEAT: domain 3 of 5, from 310 to 346: score 0.2, E = 2.3e+02 *->e.lldellplllkllnDp.dpeVReaAaeaLgalaevl<-* ++++ + ++++ + p++++VR+aA L +l e mKIAA0622 310 SeTR-LAVSRIITWTTEPkSSDVRKAAQIVLISLFELN 346 HEAT: domain 4 of 5, from 594 to 630: score 23.1, E = 0.0068 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* e++ +++l lll+ l+D+d ++R+ A++ L +++++ mKIAA0622 594 EeHFKTILLLLLETLGDKDHSIRALALRVLREILRNQ 630 HEAT: domain 5 of 5, from 712 to 748: score 23.7, E = 0.0044 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* +ll +++p ll++ + ++++VR+a++++L+a+++v+ mKIAA0622 712 LqLLVDIIPGLLQGYDNTESSVRKASVFCLVAIYSVI 748 //