hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00920/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0620  ( 1746 res)   mpf00920

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IPT      ig-like, plexins, transcription factors        214.4      1e-59   3
PSI      domain found in Plexins, Semaphorins and Int    70.9    1.6e-16   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/3     371   424 ..     1    56 []    54.6  1.3e-11
PSI        2/3     524   576 ..     1    56 []    24.0    0.022
PSI        3/3     671   712 ..     1    56 []     7.8      6.4
IPT        1/3     713   802 ..     1   111 []    82.2  6.4e-20
IPT        2/3     803   889 ..     1   111 []    78.3  9.7e-19
IPT        3/3     891   970 ..     1   111 []    61.9  8.2e-14

Alignments of top-scoring domains:
PSI: domain 1 of 3, from 371 to 424: score 54.6, E = 1.3e-11
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C+++  ++C++C++a d y CgWC++e rCt +++C+++++ ++ w
   mKIAA0620   371    ACEVH--STCGDCVGAADAY-CGWCTLETRCTLQQDCTNSSQ-PHFW 413  

                   ssg..pssqCp<-*
                   +s++++ s Cp   
   mKIAA0620   414 TSAseGPSRCP    424  

PSI: domain 2 of 3, from 524 to 576: score 24.0, E = 0.022
                   *->rCsqygv....tsCseCllardpygCgWCssegrCtrg.erCderrg
                      +Cs+ g+  ++t C++Cl+ ++p  C WC   + C++ +++C     
   mKIAA0620   524    DCSRIGQvyphTACTSCLSTQWP--CSWCIQLHSCVSNqSQCQD--- 565  

                   srqnwssgpssqCp<-*
                   s+ + s    + Cp   
   mKIAA0620   566 SPNPTSP---QDCP    576  

PSI: domain 3 of 3, from 671 to 712: score 7.8, E = 6.4
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                      +C+ ++ ++Cs+Cl+++d         ++ C+    C     +r ++
   mKIAA0620   671    NCAMGS-PDCSQCLGREDL--------GHLCVWNDGCR----LRGPL 704  

                   ssgpssqCp<-*
                     +   +Cp   
   mKIAA0620   705 QPL-PGTCP    712  

IPT: domain 1 of 3, from 713 to 802: score 82.2, E = 6.4e-20
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                       P+I +i+P sGpl GGt ++t++G+nL+ + s+v + v  g    +
   mKIAA0620   713    APEIRAIEPLSGPLDGGT-LLTIRGRNLGRRLSDVAHGVWIG----S 754  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   v+C++l + +     s++ivC t+p++    g+ s  v    +v + +++
   mKIAA0620   755 VACEPLADRYT---VSEEIVCATGPAA----GAFSDVV----TVNV-SKE 792  

                   vrtelsppspFtYv<-*
                   +r+     ++F+Yv   
   mKIAA0620   793 GRS----REQFSYV    802  

IPT: domain 2 of 3, from 803 to 889: score 78.3, E = 9.7e-19
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      +P++++++Ps Gp++GGt rit++G++L++ gs   v v++      
   mKIAA0620   803    LPTVHSLEPSMGPKAGGT-RITIHGSDLNV-GSMLQVLVNDT----- 842  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgf.dng
                    pCt l +       +t+i+C++P ++    +p++vpv    +v f+ +g
   mKIAA0620   843 DPCTDLTR------TATSITCTVPGGT----LPSPVPV----CVRFeSRG 878  

                   gvrtelsppspFtYv<-*
                    v++    +++F Y+   
   mKIAA0620   879 CVHG----NLTFWYM    889  

IPT: domain 3 of 3, from 891 to 970: score 61.9, E = 8.2e-14
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW
                      +PvIt+isP ++p+sGG+ +it+ G  +++ ++ v++ v+  Gr+  
   mKIAA0620   891    NPVITAISPGRSPVSGGR-TITVAGERFHM-VQNVSMAVHHIGReP- 934  

                   evpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdng
                    + C++l+s        t i+C +P +l    +++s+pv     +++   
   mKIAA0620   935 -TFCKVLNS--------TLITCPSPGAL----SNASAPV----DFFI--- 964  

                   gvrtelsppspFtYv<-*
                   ++r+         Y    
   mKIAA0620   965 NGRA---------YA    970  

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