hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpf/mpf00920/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0620 ( 1746 res) mpf00920 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIG IPT/TIG domain 157.3 2.6e-43 3 PSI Plexin repeat 76.2 7e-19 3 Sema Sema domain -204.1 0.23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sema 1/1 3 352 .. 1 490 [] -204.1 0.23 PSI 1/3 371 424 .. 1 63 [] 64.7 2e-15 PSI 2/3 524 576 .. 1 63 [] 31.2 2.4e-05 PSI 3/3 671 712 .. 1 63 [] -1.9 1.9 TIG 1/3 714 802 .. 1 105 [] 67.0 4.1e-16 TIG 2/3 804 889 .. 1 105 [] 67.2 3.5e-16 TIG 3/3 892 978 .. 1 105 [] 26.5 0.00062 Alignments of top-scoring domains: Sema: domain 1 of 1, from 3 to 352: score -204.1, E = 0.23 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek +++ +++ + +++ ++s mKIAA0620 3 LNVAANHPN----------------ASTV----GLVLPPTSG----- 24 ceeCkmkgkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl +g s r+L+ t G ++ + + mKIAA0620 25 ------TGGS------------RLLVGATYT-----GFGS-----AFFPR 46 gdrseaviiaetdcLFsldvekees..GkgrCPydPlhnstsvlvqgrtg ++ sl+ +++e++++++ + d+++ + +++ + mKIAA0620 47 NR--------------SLEDHRFENtpEIAIRSLDARGDLAKLFTFD--- 79 eLYsGtviDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVd ++ ++d I ++ + + ++k+ FV mKIAA0620 80 -------LN--------PSDDNILKIK------QGAKEQHKLG----FVR 104 sypipyvhsf.dDdkVYF.FFrE.taveyspnsgkaiysRVaRvCk.... +++ p v+ ++ + Y+ + E +a +++ ++ s +aR+C +++ mKIAA0620 105 AFLHPAVPPHsAQPYAYLaLNSEaRAGDKD----SQARSLLARICLprga 150 ..nDvGGrrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllpt +++ + + + + L C +G + + + L +vf +++ mKIAA0620 151 ggDAKKLTESYI-QLG-------LQC-AGGAGRGD--LYSRLVSVFPARE 189 ganlAreLgIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFe + +++VF ++ +++ A+CaF d++++++ mKIAA0620 190 --Q-------------FFAVFERPQGAPGARNAPAALCAFRFDDVQAAIR 224 nGpfkhqsnEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdl.PD ++ + p + + + v + C ++ + l+P+ mKIAA0620 225 AARTACFVE--PAPDVVAVLD-SVVQGTGPACESKRNI-------QLqPE 264 dtlnfikshpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGql + + + + + +Pl P+f +++ T++aV a + mKIAA0620 265 QLDCGAAHLQHPLTILQPLRASPVFRAPGL----TAVAVA---SANN--- 304 YtVlFlGTddGtvlKkvvvlsrsss.syeevvleelqvfkdpriePvqn. Yt +FlGT G++l ++l ++s vv+ ++ + + ePv++ mKIAA0620 305 YTAVFLGTATGRLL--KISL--NESmQ---VVSRRVLTVAYG--EPVHHv 345 leisskq<-* ++ +++ mKIAA0620 346 MQFDPMD 352 PSI: domain 1 of 3, from 371 to 424: score 64.7, E = 2e-15 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCprae. C+++++C++C++a d yCgWC +e rCt+++ +C+++++ mKIAA0620 371 ACEVHSTCGDCVGAADA-YCGWCTLETRCTLQQ-------DCTNSSq 409 pendqwldwswssskCp<-* p+ +w+ +s s+Cp mKIAA0620 410 PH--FWTSASEGPSRCP 424 PSI: domain 2 of 3, from 524 to 576: score 31.2, E = 2.4e-05 *->nCsq......ytsCssCLaardpfyCgWCssegrCtrgsaytsfyGe +Cs+ ++ ++t C+sCL+ ++ C WC ++++C+++++ + mKIAA0620 524 DCSRigqvypHTACTSCLSTQW--PCSWCIQLHSCVSNQS------Q 562 Cprae.pendqwldwswssskCp<-* C+ + +p +s ++Cp mKIAA0620 563 CQDSPnP---------TSPQDCP 576 PSI: domain 3 of 3, from 671 to 712: score -1.9, E = 1.9 *->nCsqy.tsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCprae nC+ +++Cs+CL+ +d + + C+ ++ C+ mKIAA0620 671 NCAMGsPDCSQCLGRED--------LGHLCVWND-------GCRLRG 702 .pendqwldwsws.sskCp<-* + +Cp mKIAA0620 703 pLQ---------PlPGTCP 712 TIG: domain 1 of 3, from 714 to 802: score 67.0, E = 4.1e-16 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P I +i+P+sgpl+GGt +Ti+G+nlg + +d + V+ mKIAA0620 714 PEIRAIEPLSGPLDGGTLLTIRGRNLG---------RRLSDVAHGVW 751 fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdgggsgdg +g+++ C++ + + +++ivC t+p+a+ + vtv v g mKIAA0620 752 IGSVA--CEPLADRYTvsEEIVCATGPAAgAFSDV--VTVNVSKEG---- 793 rssspvtFtYv<-* s ++F+Yv mKIAA0620 794 --RSREQFSYV 802 TIG: domain 2 of 3, from 804 to 889: score 67.2, E = 3.5e-16 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P+++s++Ps gp++GGt+iTi+Gs+l+ gs ++V+ mKIAA0620 804 PTVHSLEPSMGPKAGGTRITIHGSDLNVGS------------MLQVL 838 fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs +++t+ pC+ +++ t+i+C++P ++ + p+p v v + + g + mKIAA0620 839 VNDTD-PCTDLTRTA-TSITCTVPGGTlPSPVP--VCVRFESRG----CV 880 sspvtFtYv<-* + tF Y mKIAA0620 881 HGNLTFWYM 889 TIG: domain 3 of 3, from 892 to 978: score 26.5, E = 0.00062 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt PvIt+isP ++p+sGG +iT+ G+ + +++ + V mKIAA0620 892 PVITAISPGRSPVSGGRTITVAGERFHMVQN----------VSMAVH 928 fggtpv.pCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgr g++ ++C+v +s+ i+C +P + + +p v++ ++g mKIAA0620 929 HIGREPtFCKVLNSTL---ITCPSPGALsNASAP--VDFFINGRA----- 968 ssspvtFtYv<-* + + + + mKIAA0620 969 YADEAAEELL 978 //