hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08246/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0619  ( 777 res)   mbg08246

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C1       Protein kinase C conserved region 1 (C1) dom    55.9    5.3e-12   1
PH       Pleckstrin homology domain.                     33.2    3.6e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1         1/1     650   704 ..     1    61 []    55.9  5.3e-12
PH         1/1     540   740 ..     1    82 []    33.2  3.6e-05

Alignments of top-scoring domains:
C1: domain 1 of 1, from 650 to 704: score 55.9, E = 5.3e-12
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H f+ + ++ pt+C+ C+k++w++fk+   +++l+C++C+ kcHk++
   mKIAA0619   650    HEFIPTLYhFPTNCEACMKPLWHMFKP---PPALECRRCHIKCHKDH 693  

                   aekvpaqshksglsC<-*
                   ++k  ++    +++C   
   mKIAA0619   694 MDKKEEI----IAPC    704  

PH: domain 1 of 1, from 540 to 740: score 33.2, E = 3.6e-05
                   *->vikeGwLlkks.....k.swkkryfvLfngvLlyyksk......kpk
                        +eGwL+   +++++k +w k+y+++ ++ +l+y+s+++++++ p 
   mKIAA0619   540    SRLEGWLSLPVrnntkKfGWVKKYVIVSSKKILFYDSEqdkeqsNPY 586  

                   gsipLsgc.svre.p...................................
                   ++++++++  vr+ +  +  + + ++ ++       ++++++++++ + +
   mKIAA0619   587 MVLDIDKLfHVRPvTqtdvyradakeiprifqilyanegeskkepefpve 636  

                   ..................................................
                   + +++++   +++++  +   + + + +   ++  +  ++++  + ++ +
   mKIAA0619   637 pvgeksnyichkghefiptlyhfptnceacmkplwhmfkpppalecrrch 686  

                   ....................cFeivt.drtlllqAeseeereeWvealqs
                    + ++++ +++++   + + +  i++ +  lll A+s ee+++Wv+ l +
   mKIAA0619   687 ikchkdhmdkkeeiiapckvYYDISSaK-NLLLLANSTEEQQKWVSRLVK 735  

                   aiaka<-*
                    i k    
   mKIAA0619   736 KIPKK    740  

//