hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06204/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0617  ( 792 res)   mpm06204

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cullin   Cullin family                                 1015.9   9.3e-302   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cullin     1/1      58   690 ..     1   656 []  1015.9 9.3e-302

Alignments of top-scoring domains:
Cullin: domain 1 of 1, from 58 to 690: score 1015.9, E = 9.3e-302
                   *->WekLrdaidqiltnlknvsplsyeeLYtaVYniCtstsavphklgek
                      W++L++ai+ i+  +kn+s+ls+eeLY+++Y++      v+hk+gek
   mKIAA0617    58    WDLLKNAIQEIQ--RKNNSGLSFEELYRNAYTM------VLHKHGEK 96   

                   LYnrLkeyleeyvka.lrkslleisddenlLkeyikeWkdfstsmkmind
                   LY++L+e+++e++++++r+ +l++  + n+L++++++W+d++t+m mi+d
   mKIAA0617    97 LYTGLREVVTEHLINkVREDVLNS-LNNNFLQTLNQAWNDHQTAMVMIRD 145  

                   ifmYLdRyyvkrnidgkkevyeiyeLgLdiWreelfdn..ikdrlidalL
                   i+mY+dR+yv++n     +v+++y+LgL+i+r+++++++ i+d+l+++lL
   mKIAA0617   146 ILMYMDRVYVQQN-----NVENVYNLGLIIFRDQVVRYgcIRDHLRQTLL 190  

                   dlIekeRkGeaidr.liknvvdmlvsLgldekDmkkqklkvYkedFEkpF
                   d+I +eRkGe +dr+ i+n+++ml+ Lgl+        ++vY+edFE+pF
   mKIAA0617   191 DMIARERKGEVVDRgAIRNACQMLMILGLE-------GRSVYEEDFEAPF 233  

                   LeaTseFYkkEsskfLqensvseYlkkvEkrLeeEeeRvrlYLhsstekk
                   Le++ eF++ Es+kfL+ens+s Y+kkvE+r++eE eRv ++L++ste++
   mKIAA0617   234 LEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 283  

                   lievvekvLIekHlefLl.mehsefq.LldnnkleDLrrMYrLlsRvpnG
                   +++vve++LI+kH++++++me+s+++++l+n k+eDL++MY+L+sRvpnG
   mKIAA0617   284 IVKVVERELISKHMKTIVeMENSGLVhMLKNGKTEDLACMYKLFSRVPNG 333  

                   LeplrkilekhvkkeGlalvsklaaetdpkdyVeeLLelhdkydslvnea
                   L++++++++++++++G+alvs++ ++++p+dy++ LL+l+ ++d++++e+
   mKIAA0617   334 LKTMCECMSCYLREQGKALVSEEGEGKNPVDYIQGLLDLKSRFDRFLQES 383  

                   FnnDplFlnaLdkAfesfiNsnvvtkaskspELLAkYcDdlLKKgsKgle
                   FnnD+lF++++  +fe+f+N+n     s+spE+L++++Dd+LKKg Kgl+
   mKIAA0617   384 FNNDRLFKQTIAGDFEYFLNLN-----SRSPEYLSLFIDDKLKKGVKGLT 428  

                   eeeleekldkiivlfkyiedKDvFekfYrkmLAkRLLngkSasLddaEkr
                   e+e+e++ldk++vlf++ ++KDvFe++Y+++LA+RLL +kS+s dd+Ek+
   mKIAA0617   429 EQEVETILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVS-DDSEKN 477  

                   miekLKqvecGyefTsKLegMfkDislSkelnnsFknhlennndnldlkl
                   mi+kLK+ ecG++fTsKLegMf+D+s+S + +++F++hl++++ +l    
   mKIAA0617   478 MISKLKT-ECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQATGVSLG--- 523  

                   edeeneEgidlsvkvLstgfWPtlp.epsinfnLPeelekalerFeefYl
                          g+dl+v+vL+tg+WPt++ +p+  +n+P+  + a+e+F+ fYl
   mKIAA0617   524 -------GVDLTVRVLTTGYWPTQSaTPK--CNIPPAPRHAFEIFRRFYL 564  

                   kkhsgpdRkLtWlhsLGkgelkaefndgtk...................s
                   +khsg  R+Lt++h++G+++l+a+f+++ k++++++ + ++ + ++++++
   mKIAA0617   565 AKHSG--RQLTLQHHMGSADLNATFYGPVKkedgsevgvggaqvtgsntR 612  

                   kyeltVstyQmavLLLFNdkeeltyeelqeatqipedeLrrtLqsLlkak
                   k++l+Vst+Qm++L+LFN++e++t+ee+q++t+ipe eL+r+LqsL+++k
   mKIAA0617   613 KHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGK 662  

                   vllllllryetpgekspkdkeispntkfslNenft<-*
                    ++++l        k+pk+kei+ + +f +N++ft   
   mKIAA0617   663 PTQRVLT-------KEPKSKEIESGHIFTVNDQFT    690  

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