hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj11041/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0613  ( 730 res)   mfj11041

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LIM      Zinc-binding domain present in Lin-11, Isl-1   204.8      8e-57   3
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      69.6      4e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      57   130 ..     1    80 []    69.6    4e-16
LIM        1/3     553   604 ..     1    52 []    68.7  7.2e-16
LIM        2/3     612   663 ..     1    52 []    78.7  7.2e-19
LIM        3/3     671   724 ..     1    52 []    73.4  2.9e-17

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 57 to 130: score 69.6, E = 4e-16
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                      g++Gf+++g+++ + ++ +s++ pGs Aa++       L  GD +++
   mKIAA0613    57    GPWGFRLQGgkdfnmPLTISRITPGSKAAQSQ------LSQGDLVVA 97   

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   ++G ++++++th+ea++ +k+a+       ++Lt+++ +   
   mKIAA0613    98 IDG-VNTDTMTHLEAQNKIKSASY-----NLSLTLQKSK    130  

LIM: domain 1 of 3, from 553 to 604: score 68.7, E = 7.2e-16
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg.tffekdgk
                       C++C+  I+g   l+a+g++wHpe F C+ Ck++L++  f+e+ ++
   mKIAA0613   553    LCGHCNNVIRG-PFLVAMGRSWHPEEFNCAYCKTSLADvCFVEEQNN 598  

                   lyCkdc<-*
                   +yC++c   
   mKIAA0613   599 VYCERC    604  

LIM: domain 2 of 3, from 612 to 663: score 78.7, E = 7.2e-19
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg.tffekdgk
                      +Ca+C+ +I+g ev++al ++wH  CF+C+ Ckkp+g++ f+++dg+
   mKIAA0613   612    ICAKCNTKIMG-EVMHALRQTWHTTCFVCAACKKPFGNsLFHMEDGE 657  

                   lyCkdc<-*
                   +yC+++   
   mKIAA0613   658 PYCEKD    663  

LIM: domain 3 of 3, from 671 to 724: score 73.4, E = 2.9e-17
                   *->kCagCgkpItg.devlralgkvwHpeCFkCskCkkpLgg.tffekdg
                      kC+gC+ p++++d+ ++alg++wH  CF C++C+ +L+g+ f++k++
   mKIAA0613   671    KCHGCDFPVEAgDKFIEALGHTWHDTCFICAVCHVNLEGqPFYSKKD 717  

                   klyCkdc<-*
                   k++Ck++   
   mKIAA0613   718 KPLCKKH    724  

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