hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj39041/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0608  ( 738 res)   mfj39041

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      TBC domain                                      82.0    1.2e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     446   677 ..     1   219 []    82.0  1.2e-20

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 446 to 677: score 82.0, E = 1.2e-20
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdek.....e
                         G p s r+kVW +  g   l+   +  Ye  l+r  e  ++ +e
   mKIAA0608   446    --QGLPPSVRGKVWSLAVG-NELN-ITPELYEIFLSRAKERwksfsE 488  

                   s...............qavdkIekDvkRtLvkesaFqsrGKGegiskLrr
                   s++++++++ +  +++++ + I  D++Rt +    Fq    G+    L  
   mKIAA0608   489 SssendteglsvadreASLELIKLDISRTFPSLYIFQ--KGGPYHDVLHS 536  

                   vLvAYswknPdvgYcQGMNVvaApfLllykSEeqAFyfLdrLlenvvPlK
                   +L AY   +PdvgY+QGM  +aA + l    E +AF  + +Ll   + l 
   mKIAA0608   537 ILGAYTCYRPDVGYVQGMSFIAAVLILNL-EEADAFIAFANLLNKPCQLA 585  

                   YylpdldGvrlDqkvLdsfveellprLYeYLlskgvdlkvvsLpwfLsLy
                   ++  d    +     ++ f ee l +L+ +  s  ++ +++   w+ +Ly
   mKIAA0608   586 FFRVDHSMMLKYFATFEVFFEENLSKLFLHFKSYNLTPDIYLIDWIFTLY 635  

                   attlPleeAlrIfDiLFadGivllfrvaLAvLkilkeqiLda<-*
                     +lPl+ A r++D +  dG   lfr  L +L  + + +L+    
   mKIAA0608   636 SKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRLYEDILLQM    677  

//