hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh00762/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0607 ( 652 res) mbh00762 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Neurochondrin Neurochondrin 1466.3 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Neurochondrin 1/1 1 652 [] 1 790 [] 1466.3 0 Alignments of top-scoring domains: Neurochondrin: domain 1 of 1, from 1 to 652: score 1466.3, E = 0 *->MAaaPePALnqAEeRsPsLekclklLkgekddsekfAALLLVTKlvK mKIAA0607 - ----------------------------------------------- - adDidAknkklvFeAVGftFLdrLLvtkeapdDCpDnRDVykavsvavLA +AVGftF++rLL+tkeapd+CpD+ V++a++va+LA mKIAA0607 1 -------------DAVGFTFPNRLLTTKEAPDGCPDH--VLRALGVALLA 35 cFCrepELAsheevvdkIPlLvevlekaddeddedrlimvedaYecLkaV cFC++pELAsh++v++kIP+L ++l++++d+dd++r++m++d+Y+cL+aV mKIAA0607 36 CFCSDPELASHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAV 85 SaateaGlraLiasGavrvlaqqmSeysdqSyamdeALkLLvLLvskldv a+t++G+r+Lia+G+v++l+q +y++++y++d+AL+LLv+L++++++ mKIAA0607 86 -AGTPRGPRHLIAGGTVSALCQ---AYLGHGYGFDQALALLVGLLAAAET 131 vSwkiEaeleLsaviravArdfevaedalKFElcrLLPLFLPPaaVlsec ++wk Eae++L+av+r++++df++aeda+KFElc+LLPLFLPP++V++ec mKIAA0607 132 QCWK-EAEPDLLAVLRGLSEDFQRAEDASKFELCQLLPLFLPPTTVPPEC 180 rrellHEPlrSledniWadyLrkGvaaILkakvapkqrdpALkLaarllh +r+ L++G+a+IL++k++++qr+pALkLaarl+h mKIAA0607 181 HRD-----------------LQAGLARILGSKLSSWQRNPALKLAARLAH 213 vLGekWllGGVKLPNvDesadkfLlLllelsaVEVrllLdeLAYKKYEAP ++G++W++ v++s++kfL+Ll++l++VEVrl+L+e mKIAA0607 214 ACGSDWIP-------VGSSGSKFLALLVNLACVEVRLALEE--------- 247 KDNkkaEvilkkeelLticFSLlEkiIqeYissAGENeqtlleekekqkv +++Ev ke+++t+c++L+E++Iqe++++ eq+ll+e++k+++ mKIAA0607 248 ---TGTEV---KEDVVTACYALMELGIQECTRC----EQSLLKEPQKVQL 287 vkiLkeavgaVleyLrdvkeekikessdPKDKKFvfAsVrVLgAwLAeet v+i+kea+gaV++yL++v++ek+ke+ FvfAsVr+LgAwLAeet mKIAA0607 288 VSIMKEAIGAVIHYLLQVGPEKQKEP-------FVFASVRILGAWLAEET 330 vAlreeVydLLpFmLkvakelyeElkEAsDisqqvAnLairatTrdeesP ++lr+eV++LLpF++++ak+lyeE++EAsDisqqvAnLai++tT+++++P mKIAA0607 331 SSLRKEVCQLLPFLVRYAKTLYEEAEEASDISQQVANLAISPTTPGPSWP 380 idalrlLLPaLChltveeearkvLikekaDevlvesLEFYyflaqWklts +dalrlLLP++Chltve+++r++Like+a+++l++ yfl+qW+lts mKIAA0607 381 GDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCK-----YFLQQWELTS 425 iPRAERLKRmnEPDPvPthdtsvlmdvvrialvalCnIllNlvVlePkki P+hdtsvl+d+v+i+l+++C+I+lNlvV++P++i mKIAA0607 426 ----------------PGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLI 459 kddacfikLlervveslPeLkddeDrlvllAnvavLgLLLkrllSkkvkl k+dacf++L++++++slP+L+++++rl+l+Anva+LgLL++rllS++++l mKIAA0607 460 KRDACFTSLMNTLMTSLPSLVQQQGRLLLAANVATLGLLMARLLSTSPAL 509 ndfsisRGyiaAaIlFLsdayvieeisssdiavLavslkykgyWADlsel +++++sRG++aAaIlFLs+++v++++++sd+avLa+s++y+g+WADl+el mKIAA0607 510 QGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPDYEGIWADLQEL 559 wflgMqAasgcvpLlpwlSeaALrSrWaeeLvkslkdvkarlvkaelkSA wflgMqA++gcvpLlpwl++aALrSrW++eL+++l++v++++vk+e+++A mKIAA0607 560 WFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAA 609 YqDvLveLvdvNsdvrdvLkliaAeesariyRmaaLekkLved<-* Yq+vLveL+++N+++r++++l+a+ee+a++yRmaaLe++L+e+ mKIAA0607 610 YQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP 652 //