hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg00108/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0606 ( 1318 res) mbg00108 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PP2Cc Serine/threonine phosphatases, family 2C, ca 208.9 4.6e-58 1 LRR_BAC Leucine-rich repeats, bacterial type 81.1 1.4e-19 11 LRR_TYP Leucine-rich repeats, typical (most populate 72.9 4e-17 9 LRR_PS Leucine-rich repeat, plant-specific subfamil 68.2 1.1e-15 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_BAC 1/11 246 265 .. 1 20 [] 0.4 5.5e+02 LRR_BAC 2/11 279 296 .. 1 20 [] 6.0 1e+02 LRR_PS 1/7 277 299 .. 1 24 [] 17.7 1.6 LRR_TYP 1/9 277 300 .. 1 24 [] 13.9 8.4 LRR_BAC 3/11 300 319 .. 1 20 [] 11.9 17 LRR_PS 2/7 300 322 .. 1 24 [] 9.9 61 LRR_TYP 2/9 323 345 .. 1 24 [] 10.0 25 LRR_PS 3/7 323 345 .. 1 24 [] 9.8 65 LRR_BAC 4/11 346 365 .. 1 20 [] 6.6 85 LRR_PS 4/7 346 368 .. 1 24 [] 13.8 19 LRR_TYP 3/9 346 369 .. 1 24 [] 11.6 16 LRR_TYP 4/9 417 440 .. 1 24 [] 8.5 38 LRR_BAC 5/11 480 499 .. 1 20 [] 13.9 9.5 LRR_BAC 6/11 503 522 .. 1 20 [] 6.1 1e+02 LRR_PS 5/7 504 525 .. 1 24 [] 0.1 1.2e+03 LRR_TYP 5/9 504 526 .. 1 24 [] 10.3 23 LRR_BAC 7/11 526 545 .. 1 20 [] 10.1 30 LRR_TYP 6/9 527 549 .. 1 24 [] 2.9 1.8e+02 LRR_BAC 8/11 550 567 .. 1 20 [] 4.5 1.6e+02 LRR_PS 6/7 549 570 .. 1 24 [] 4.1 3.5e+02 LRR_TYP 7/9 550 571 .. 1 24 [] 10.5 21 LRR_BAC 9/11 572 591 .. 1 20 [] 11.5 19 LRR_TYP 8/9 574 595 .. 1 24 [] 5.2 96 LRR_BAC 10/11 622 641 .. 1 20 [] 10.7 25 LRR_BAC 11/11 646 665 .. 1 20 [] 9.3 38 LRR_PS 7/7 646 668 .. 1 24 [] 15.3 8.7 LRR_TYP 9/9 646 669 .. 1 24 [] 15.1 5.9 PP2Cc 1/1 752 1007 .. 1 338 [] 208.9 4.6e-58 Alignments of top-scoring domains: LRR_BAC: domain 1 of 11, from 246 to 265: score 0.4, E = 5.5e+02 *->PpsLkeLnvsnNrLteLPeL<-* + L+ Ln N L+ P L mKIAA0606 246 SQDLTHLNLKQNFLRQTPTL 265 LRR_BAC: domain 2 of 11, from 279 to 296: score 6.0, E = 1e+02 *->PpsLkeLnvsnNrLteLPeL<-* +Lk+Ln snN+L +P mKIAA0606 279 --KLKSLNLSNNHLGAFPSA 296 LRR_PS: domain 1 of 7, from 277 to 299: score 17.7, E = 1.6 *->LtsLqvLdLsnNnLsGeIPsslgn<-* +t+L++L+LsnN+L +Ps ++ mKIAA0606 277 FTKLKSLNLSNNHLG-AFPSAVCS 299 LRR_TYP: domain 1 of 9, from 277 to 300: score 13.9, E = 8.4 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L++L+LsnN+L + P+ +++ mKIAA0606 277 FTKLKSLNLSNNHLGAFPSAVCSI 300 LRR_BAC: domain 3 of 11, from 300 to 319: score 11.9, E = 17 *->PpsLkeLnvsnNrLteLPeL<-* p+L eLnvs+N L+e P+ mKIAA0606 300 IPTLAELNVSCNALREVPAA 319 LRR_PS: domain 2 of 7, from 300 to 322: score 9.9, E = 61 *->LtsLqvLdLsnNnLsGeIPsslgn<-* ++ L +L++s N L e+P+ g+ mKIAA0606 300 IPTLAELNVSCNALR-EVPAAVGD 322 LRR_TYP: domain 2 of 9, from 323 to 345: score 10.0, E = 25 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + nL++ L++N L+sLP+++ ++ mKIAA0606 323 MQNLQTFLLDGNFLQSLPAEL-ES 345 LRR_PS: domain 3 of 7, from 323 to 345: score 9.8, E = 65 *->LtsLqvLdLsnNnLsGeIPsslgn<-* +++Lq++ L +N L ++P++l + mKIAA0606 323 MQNLQTFLLDGNFLQ-SLPAELES 345 LRR_BAC: domain 4 of 11, from 346 to 365: score 6.6, E = 85 *->PpsLkeLnvsnNrLteLPeL<-* ++L +L+ s+N+ t+ Pe mKIAA0606 346 MHQLSYLGLSFNEFTDIPEV 365 LRR_PS: domain 4 of 7, from 346 to 368: score 13.8, E = 19 *->LtsLqvLdLsnNnLsGeIPsslgn<-* +++L++L Ls+N ++ IP+ l + mKIAA0606 346 MHQLSYLGLSFNEFT-DIPEVLEK 368 [output cut off at A = 10 top alignments] //