hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00108/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0606 ( 1318 res) mbg00108 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_1 Leucine Rich Repeat 140.2 3.6e-38 19 PP2C Protein phosphatase 2C 92.1 1.1e-23 1 PH PH domain 32.0 1.4e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/1 124 223 .. 1 92 [] 32.0 1.4e-05 LRR_1 1/19 225 247 .. 1 25 [] 7.6 1.1e+02 LRR_1 2/19 248 272 .. 1 25 [] 6.4 1.7e+02 LRR_1 3/19 279 301 .. 1 25 [] 14.1 3.4 LRR_1 4/19 302 324 .. 1 25 [] 9.4 56 LRR_1 5/19 325 347 .. 1 25 [] 11.5 20 LRR_1 6/19 348 370 .. 1 25 [] 14.7 2.3 LRR_1 7/19 371 394 .. 1 25 [] 1.2 1.3e+03 LRR_1 8/19 395 418 .. 1 25 [] 1.7 1e+03 LRR_1 9/19 419 442 .. 1 25 [] 8.6 75 LRR_1 10/19 482 504 .. 1 25 [] 6.3 1.8e+02 LRR_1 11/19 505 527 .. 1 25 [] 13.3 5.8 LRR_1 12/19 528 547 .. 1 25 [] 5.7 2.3e+02 LRR_1 13/19 550 569 .. 1 25 [] 12.9 7.9 LRR_1 14/19 574 597 .. 1 25 [] 10.0 43 LRR_1 15/19 600 623 .. 1 25 [] 4.9 3.1e+02 LRR_1 16/19 624 647 .. 1 25 [] 10.2 42 LRR_1 17/19 648 670 .. 1 25 [] 12.8 8.5 LRR_1 18/19 693 714 .. 1 25 [] 6.0 2e+02 LRR_1 19/19 716 739 .. 1 25 [] 9.6 51 PP2C 1/1 761 1002 .. 1 305 [] 92.1 1.1e-23 Alignments of top-scoring domains: PH: domain 1 of 1, from 124 to 223: score 32.0, E = 1.4e-05 *->vikeGwLlkkg.....gkkswkkRyfvLfndvLlyykdkk..kkpkg + +G ++ ++ + +w +R ++L++++L+ k++ + + + mKIAA0606 124 IQLSGMYNVRKgkmqlPVNRWTRRQVILCGTCLIVSSVKDsvSGKMH 170 sipLsgiqvekvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkai ++pL g +ve+v++ +++c+ ++++++++t+++++++ e +W+++ mKIAA0606 171 VLPLIGGKVEEVKK--HQHCLAFSSsGPqsQTYYICFDTFTEYLRWLRQV 218 qsair<-* +++++ mKIAA0606 219 SKVAS 223 LRR_1: domain 1 of 19, from 225 to 247: score 7.6, E = 1.1e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* ++ ++dLs+C sl+ +lp++l + mKIAA0606 225 RISSVDLSCC--SLE-HLPANLfYSQ 247 LRR_1: domain 2 of 19, from 248 to 272: score 6.4, E = 1.7e+02 *->nLeeLdLsgCNpslsgs...lppsl.glp<-* L++L+L N l + +++lp+ +gl mKIAA0606 248 DLTHLNLKQ-N-FL-RQtptLPA-ArGLG 272 LRR_1: domain 3 of 19, from 279 to 301: score 14.1, E = 3.4 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L++L+Ls+ N +l g +p+ + p mKIAA0606 279 KLKSLNLSN-N-HL-GAFPSAVcSIP 301 LRR_1: domain 4 of 19, from 302 to 324: score 9.4, E = 56 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L eL++s+ N l +++p+ ++++ mKIAA0606 302 TLAELNVSC-N-AL-REVPAAVgDMQ 324 LRR_1: domain 5 of 19, from 325 to 347: score 11.5, E = 20 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL++ L+g N l+ slp++l+++ mKIAA0606 325 NLQTFLLDG-N-FLQ-SLPAELeSMH 347 LRR_1: domain 6 of 19, from 348 to 370: score 14.7, E = 2.3 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L +L Ls N +++ ++p+ l++l+ mKIAA0606 348 QLSYLGLSF-N-EFT-DIPEVLeKLT 370 LRR_1: domain 7 of 19, from 371 to 394: score 1.2, E = 1.3e+03 *->nLeeLdLsgCNpslsgslpps.l.glp<-* + +L + g N ++ +l +l+ +p mKIAA0606 371 AVDKLCMAG-N-CVE-TLRLQaLrRMP 394 LRR_1: domain 8 of 19, from 395 to 418: score 1.7, E = 1e+03 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +++++dL+ N l + l ++ + + mKIAA0606 395 HIKHVDLRL-N-IL-RKLMADeVdFVQ 418 LRR_1: domain 9 of 19, from 419 to 442: score 8.6, E = 75 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +++ LdL++ N +l g+l + +++ mKIAA0606 419 HVTQLDLRD-N-KL-GDLDAMiFnNIE 442 LRR_1: domain 10 of 19, from 482 to 504: score 6.3, E = 1.8e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* L + d+s+ N l+ s+p++ + mKIAA0606 482 YLSYMDVSR-N-CLE-SVPEWVcESR 504 LRR_1: domain 11 of 19, from 505 to 527: score 13.3, E = 5.8 *->nLeeLdLsgCNpslsgslppsl.glp<-* +Le+Ld+++ N ++ +lp+ l + mKIAA0606 505 KLEVLDIGH-N-QIC-ELPARLfCNS 527 LRR_1: domain 12 of 19, from 528 to 547: score 5.7, E = 2.3e+02 *->nLeeLdLsgCNpslsgslppslglp<-* +L++L ++ N +l lp+ l mKIAA0606 528 SLRKLLAGH-N-RLA-RLPE--RLE 547 LRR_1: domain 13 of 19, from 550 to 569: score 12.9, E = 7.9 *->nLeeLdLsgCNpslsgslppslglp<-* ++e+Ld+++ N +++ +lpp +l mKIAA0606 550 SVEVLDVQH-N-QIT-ELPP--NLL 569 LRR_1: domain 14 of 19, from 574 to 597: score 10.0, E = 43 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L+ L+ s N +l+ +lpp +l+ + mKIAA0606 574 SLRFLNASA-N-KLE-TLPPAtLsEET 597 LRR_1: domain 15 of 19, from 600 to 623: score 4.9, E = 3.1e+02 *->nLeeLdLsgCNpslsgs..lppsl.glp<-* L+eL+L + N l+ ++ +p l g p mKIAA0606 600 ILQELYLTN-N-CLT-DkcVPL-LtGHP 623 LRR_1: domain 16 of 19, from 624 to 647: score 10.2, E = 42 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L++L++ + N +l+ s+p+s+ +l mKIAA0606 624 RLKILHMAY-N-RLQ-SFPASkMaKLE 647 LRR_1: domain 17 of 19, from 648 to 670: score 12.8, E = 8.5 *->nLeeLdLsgCNpslsgslppsl.glp<-* +Lee+d+sg N +l + +p + +++ mKIAA0606 648 ELEEIDISG-N-KL-KAIPTTImNCR 670 LRR_1: domain 18 of 19, from 693 to 714: score 6.0, E = 2e+02 *->nLeeLdLsgCNpslsgs..lppslglp<-* +++ +dLs+ N +ls + +lp+ +lp mKIAA0606 693 EVKCVDLSC-N-ELS-EitLPE--NLP 714 LRR_1: domain 19 of 19, from 716 to 739: score 9.6, E = 51 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L+eLdL g Np+l ++sl+ l mKIAA0606 716 KLQELDLTG-NPRLA-LDHKSLeLLN 739 PP2C: domain 1 of 1, from 761 to 1002: score 92.1, E = 1.1e-23 *->ldvgvsrmqgwrksmeDahialknlnssssgkdswsffavfDGhgGs + +g ++ g + ++ a ++ +n++ ++ +++++vfDG mKIAA0606 761 WSHGYTEASGVKNKLCVAALSVNNFR-----DNREALYGVFDGDRNV 802 qaakyagkhlhktilaerksfpegdpwEmklsdledalkesfleadtdee ++ + ++ +ilae + +e+ + ++f + + mKIAA0606 803 EVPYLLQCTMS-DILAEELQKTKN---------EEEYMVNTFIV--MQRK 840 lrsaeassankvltkedlssGsTAvvalirgnkk......lLyVANvGDS l + + ++ G+ Av+++i ++ ++ +++ L ANvG + mKIAA0606 841 LGT------------AGQKLGGAAVLCHIKPDPVdlggsfTLTSANVGKC 878 RavLcrngnaikwavtLteDHkPsnedEreRIeaaGGfvsrvsgngRvnG ++vLcrng++ L++ s+e+Er+RI++ + +g+vnG mKIAA0606 879 QTVLCRNGKPL----SLSRSYIMSCEEERKRIKQHKAIITE---DGKVNG 921 vfLavSRAfGDfelKpgsklgpeesleanyeyikspeqlVtaePdvtsst v + +R +G+++l p V++ P v+ s+ mKIAA0606 922 V-TESTRILGYTFLHP----------------------SVVPRPHVQ-SV 947 dltpdkDeFliLAcDGLWDvvsdqevvdivrselsdgnrsagdpmeaaek ltp+ DeF+iL++ GLWD +s +e+v+ vr + ++ aa+k mKIAA0606 948 LLTPQ-DEFFILGSKGLWDSLSIDEAVEAVRNVPD--------ALAAAKK 988 lvdeaiargseDni<-* l+++a+++g++D+i mKIAA0606 989 LCTLAQSYGCHDSI 1002 //