hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf03178/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0605  ( 402 res)   mpf03178

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP1     Thrombospondin type 1 repeats                   87.4    1.7e-21   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP1       1/5      76   137 ..     1    66 []    22.9     0.03
TSP1       2/5     139   189 ..     1    66 []    10.9     0.66
TSP1       3/5     192   241 ..     1    66 []    30.6  0.00022
TSP1       4/5     248   306 ..     1    66 []    19.0     0.08
TSP1       5/5     308   359 ..     1    66 []    35.9  5.4e-06

Alignments of top-scoring domains:
TSP1: domain 1 of 5, from 76 to 137: score 22.9, E = 0.03
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +e+s+WS+CS +tCG+G     ++ R  +    c    +p      
   mKIAA0605    76    RWETSSWSECS-RTCGEG-----HQFRIVR----CWKMLSP------ 106  

                   epCs................EtrpCntqpnLqpCp<-*
                   +  s+  ++  + ++  +++E ++C  +    +C    
   mKIAA0605   107 GFDSsvysdlceateavrpeERKTCRNP----ACG    137  

TSP1: domain 2 of 5, from 139 to 189: score 10.9, E = 0.66
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +e seWS+C+ + CG+     +v tR        cs        ++
   mKIAA0605   139    QWEMSEWSECT-AKCGER----SVVTRDI-----RCS-------EDE 168  

                   epCs......EtrpCntqpnLqpCp<-*
                   + C++++++   + C+++    pC+   
   mKIAA0605   169 KLCDpstkpvGEKNCTGP----PCD    189  

TSP1: domain 3 of 5, from 192 to 241: score 30.6, E = 0.00022
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w+  s+W+pCSg +CG G     + +R+ +    c+   ++   +++
   mKIAA0605   192    WT-VSDWGPCSG-SCGQG-----RTIRHVY----CKTSDGR--VVPE 225  

                   epCs.EtrpCntqpnLqpCp<-*
                   ++C++Et+p   +    pC    
   mKIAA0605   226 SQCQtETKPLAIH----PCG    241  

TSP1: domain 4 of 5, from 248 to 306: score 19.0, E = 0.08
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ++   +W  C   tCG+G     v++R    l +   + +p+    g
   mKIAA0605   248    HWLAQDWERCN-TTCGRG-----VKKRLV--LCMELANGKPQ-IRSG 285  

                   epCs......EtrpCntqpnLqpCp<-*
                   ++C   ++++E  +C+++    pC    
   mKIAA0605   286 PECGlarkppEESTCFER----PCF    306  

TSP1: domain 5 of 5, from 308 to 359: score 35.9, E = 5.4e-06
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w  +s+WS+C+ +tCG G     vr+R  +    c  +         
   mKIAA0605   308    WY-TSPWSECT-KTCGVG-----VRMRDVK----CYQG-----TDIV 338  

                   epCs......EtrpCntqpnLqpCp<-*
                   + C++  ++   ++C +q    pCp   
   mKIAA0605   339 RGCDplvkpvGRQACDLQ----PCP    359  

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