hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf03178/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0605  ( 402 res)   mpf03178

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP_1    Thrombospondin type 1 domain                    20.1     0.0016   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP_1      1/4      77   136 ..     1    55 []    15.2   0.0062
TSP_1      2/4     190   245 ..     1    55 []     7.7    0.049
TSP_1      3/4     249   305 ..     1    55 []    -4.0      1.3
TSP_1      4/4     308   358 ..     1    55 []    24.9  0.00043

Alignments of top-scoring domains:
TSP_1: domain 1 of 4, from 77 to 136: score 15.2, E = 0.0062
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe....
                       ++s WS+CS TCG+G++ R+ +c ++      +++    + +  + 
   mKIAA0605    77    WETSSWSECSRTCGEGHQFRIVRCWKML----SPGFDSSVYSDlcea 119  

                   ......leteaCdmmdkC<-*
                   ++  ++ e + C + + C   
   mKIAA0605   120 teavrpEERKTC-RNPAC    136  

TSP_1: domain 2 of 4, from 190 to 245: score 7.7, E = 0.049
                   *->spW..seWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe..
                       +W+ s W pCS +CG G ++R+ +c+ +    ++g   ++ + +++
   mKIAA0605   190    RQWtvSDWGPCSGSCGQGRTIRHVYCK-T----SDGRVVPESQCQte 231  

                   ...leteaCdmmdkC<-*
                   +++l +++C   + C   
   mKIAA0605   232 tkpLAIHPC-GDKNC    245  

TSP_1: domain 3 of 4, from 249 to 305: score -4.0, E = 1.3
                   *->spWseWSpCSVTCGkGirtRqRvcnspa...PqkkggepCtgdvqel
                           W+ C+ TCG G++ R  +c   a+++Pq   g+ C +   + 
   mKIAA0605   249    WLAQDWERCNTTCGRGVKKRLVLCMELAngkPQIRSGPECGLARKPP 295  

                   eteaCdmmdkC<-*
                   e   C   ++C   
   mKIAA0605   296 EESTC-FERPC    305  

TSP_1: domain 4 of 4, from 308 to 358: score 24.9, E = 0.00043
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqk..kggepCtgdvqele
                        +s+WS+C++TCG G+r+R  +c +        g  p++ +v +  
   mKIAA0605   308    WYTSPWSECTKTCGVGVRMRDVKCYQGT--DivRGCDPLVKPVGR-- 350  

                   teaCdmmdkC<-*
                    +aC   ++C   
   mKIAA0605   351 -QAC-DLQPC    358  

//