hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj60230/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0603  ( 956 res)   mfj60230

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   270.7    1.1e-76   1
PTB      Phosphotyrosine-binding domain, phosphotyros    86.9    2.4e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PTB        1/1      27   169 ..     1   156 []    86.9  2.4e-21
TBC        1/1     573   793 ..     1   310 []   270.7  1.1e-76

Alignments of top-scoring domains:
PTB: domain 1 of 1, from 27 to 169: score 86.9, E = 2.4e-21
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr.......
                      ++  + +   +  v+ ++          +++  ++ r+ ++ +++ +
   mKIAA0603    27    QQEFRSRCSSVTGVMQKKVH-------ENNQKTQPRRRHAsapshvq 66   

                   .sekkkpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwnt
                   +s+++k+++++++v +  ++li+++tk v++e++++ Is c++++     
   mKIAA0603    67 pSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGI----- 111  

                   GgdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaa.aediala
                         +++++Fg+i+r+ +      g s+++C+VF+c++++ +++++l+
   mKIAA0603   112 ------KHVDHFGFICRESPEP----GLSQYICYVFQCANESlVDEVMLT 151  

                   igqaFqvayelklkarse<-*
                   ++qaF++a+ l+ +++++   
   mKIAA0603   152 LKQAFSTAAALQSAKTQI    169  

TBC: domain 1 of 1, from 573 to 793: score 270.7, E = 1.1e-76
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqka.kdaesqflvvnd
                       + Gvp s Rge+W++L+ +++  +  + + q++++           
   mKIAA0603   573    LKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPdTS---------- 609  

                   drlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdnds
                         Y +ll+q   +++                               
   mKIAA0603   610 ------YKELLKQLTAQQH------------------------------- 622  

                   ldqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYs
                     +I +Dl RTfp++++F               + g+gq sL+++LkaYs
   mKIAA0603   623 --AILVDLGRTFPTHPYFSV-------------QLGAGQLSLFNLLKAYS 657  

                   lynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflf
                   l+++e  vgYcQG++f+a++LLl+m   +Ee+AF ++++Lm++ + ++ +
   mKIAA0603   658 LLDKE--VGYCQGISFVAGVLLLHM---SEEQAFEMLKFLMYDLGFRKQY 702  

                   kdtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdk
                          +pd++ lq+++++l++ll++y+ eLy+HL+e            
   mKIAA0603   703 -------RPDMMSLQIQMYQLSRLLHDYHRELYNHLEE------------ 733  

                   leidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkial
                   +ei+pslya++WfLtlFa+++Pl++v+R++D++f++    g e++fk+al
   mKIAA0603   734 NEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQ----GTEVIFKVAL 779  

                   aiLklnedkllkld<-*
                   ++L ++e +++++    
   mKIAA0603   780 SLLSSQEALIMECE    793  

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