hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj60230/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0603 ( 956 res) mfj60230 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable 270.7 1.1e-76 1 PTB Phosphotyrosine-binding domain, phosphotyros 86.9 2.4e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PTB 1/1 27 169 .. 1 156 [] 86.9 2.4e-21 TBC 1/1 573 793 .. 1 310 [] 270.7 1.1e-76 Alignments of top-scoring domains: PTB: domain 1 of 1, from 27 to 169: score 86.9, E = 2.4e-21 *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr....... ++ + + + v+ ++ +++ ++ r+ ++ +++ + mKIAA0603 27 QQEFRSRCSSVTGVMQKKVH-------ENNQKTQPRRRHAsapshvq 66 .sekkkpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwnt +s+++k+++++++v + ++li+++tk v++e++++ Is c++++ mKIAA0603 67 pSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGI----- 111 GgdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaa.aediala +++++Fg+i+r+ + g s+++C+VF+c++++ +++++l+ mKIAA0603 112 ------KHVDHFGFICRESPEP----GLSQYICYVFQCANESlVDEVMLT 151 igqaFqvayelklkarse<-* ++qaF++a+ l+ +++++ mKIAA0603 152 LKQAFSTAAALQSAKTQI 169 TBC: domain 1 of 1, from 573 to 793: score 270.7, E = 1.1e-76 *->vrkGvppslRgeVWklLlnaqpmntsnweraqka.kdaesqflvvnd + Gvp s Rge+W++L+ +++ + + + q++++ mKIAA0603 573 LKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPdTS---------- 609 drlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdnds Y +ll+q +++ mKIAA0603 610 ------YKELLKQLTAQQH------------------------------- 622 ldqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYs +I +Dl RTfp++++F + g+gq sL+++LkaYs mKIAA0603 623 --AILVDLGRTFPTHPYFSV-------------QLGAGQLSLFNLLKAYS 657 lynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflf l+++e vgYcQG++f+a++LLl+m +Ee+AF ++++Lm++ + ++ + mKIAA0603 658 LLDKE--VGYCQGISFVAGVLLLHM---SEEQAFEMLKFLMYDLGFRKQY 702 kdtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdk +pd++ lq+++++l++ll++y+ eLy+HL+e mKIAA0603 703 -------RPDMMSLQIQMYQLSRLLHDYHRELYNHLEE------------ 733 leidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkial +ei+pslya++WfLtlFa+++Pl++v+R++D++f++ g e++fk+al mKIAA0603 734 NEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQ----GTEVIFKVAL 779 aiLklnedkllkld<-* ++L ++e +++++ mKIAA0603 780 SLLSSQEALIMECE 793 //