hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj60230/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0603  ( 956 res)   mfj60230

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
TBC            TBC domain                               120.1    4.1e-32   1
PID            Phosphotyrosine interaction domain (PT   -13.5      0.041   1
Ribosomal_L35p Ribosomal protein L35                    -14.9       0.59   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Ribosomal_L35p   1/1      36    77 ..     1    59 []   -14.9     0.59
PID              1/1      38   166 ..     1   166 []   -13.5    0.041
TBC              1/1     573   792 ..     1   219 []   120.1  4.1e-32

Alignments of top-scoring domains:
Ribosomal_L35p: domain 1 of 1, from 36 to 77: score -14.9, E = 0.59
                   *->MKTrkgAaKRFKkTasGKIkRkkAfksHLLtKKStKrKRhLrkkalV
                                     +G ++ k   k H + +K+  r+Rh + +++V
   mKIAA0603    36    -------------SVTG-VMQK---KVHENNQKTQPRRRHASAPSHV 65   

                   sksDlkrVkllL<-*
                    +sD ++ +++L   
   mKIAA0603    66 QPSDSEKNRTML    77   

PID: domain 1 of 1, from 38 to 166: score -13.5, E = 0.041
                   *->FeVkYLGsvEVpeemrapskstRmqvareairrlkmavpgKkpkakk
                            G ++ + ++     +  +q +r   r ++++          
   mKIAA0603    38    -----TGVMQKKVHEN----NQKTQPRR---RHASAP---------- 62   

                   ikrskgstgerqagtkidLsistdglklldekteaekevlhehplrkISF
                      s   ++++++   ++ ++    ++l+ ++t   k+v+ e + + IS 
   mKIAA0603    63 ---SHVQPSDSEKNRTMLFQVGRFEINLISPDT---KSVVLEKNFKDISS 106  

                   iAvggDpdVdlrtFayvrstddsliaa...dgatsrfaCHvFecekgkql
                   +++   ++ + + F++        i++++++++ s+ +C+vF c   ++l
   mKIAA0603   107 CSQ--GIK-HVDHFGF--------ICRespEPGLSQYICYVFQCAN-ESL 144  

                   AediaqavgqAFevaYqeflra<-*
                     ++ +++ qAF+ a  +   +   
   mKIAA0603   145 VDEVMLTLKQAFSTAAALQSAK    166  

TBC: domain 1 of 1, from 573 to 792: score 120.1, E = 4.1e-32
                   *->vkeGvpsstrakVWavcsgAyqlrYAsage.......Yerllrrgde
                       keGvp s r+++W  +   y lr   +  +++++++Y +ll++   
   mKIAA0603   573    LKEGVPKSRRGEIWQFLALQYRLRHRLPNKhqppdtsYKELLKQLTA 619  

                   kesqavdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvg
                      +    I  D+ Rt +    F  +  G g+ +L ++L AYs    +vg
   mKIAA0603   620 QQHA----ILVDLGRTFPTHPYFSVQ-LGAGQLSLFNLLKAYSLLDKEVG 664  

                   YcQGMNVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDq
                   YcQG   va  +Ll + SEeqAF +L  L+      K y pd++      
   mKIAA0603   665 YCQGISFVAGVLLLHM-SEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQM 713  

                   kvLdsfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIf
                     L   + +   +LY +L+   +  + ++ pwfL+L+a   Pl    r+f
   mKIAA0603   714 YQLSRLLHDYHRELYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVF 763  

                   DiLFadGivllfrvaLAvLkilkeqiLda<-*
                   Di F  G  + f+vaL  L +    i+++   
   mKIAA0603   764 DIIFLQGTEVIFKVALSLLSSQEALIMEC    792  

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