hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh00670/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0601 ( 879 res) mbh00670 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Amino_oxidase Flavin containing amine oxidoreductase 417.7 1e-121 1 SWIRM SWIRM domain 87.6 2.4e-22 1 Pyr_redox Pyridine nucleotide-disulphide oxidored -10.0 0.64 1 DAO FAD dependent oxidoreductase -34.0 0.011 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SWIRM 1/1 201 291 .. 1 95 [] 87.6 2.4e-22 Pyr_redox 1/1 307 394 .. 1 102 [] -10.0 0.64 DAO 1/1 307 758 .. 1 402 [] -34.0 0.011 Amino_oxidase 1/1 315 853 .. 1 481 [] 417.7 1e-121 Alignments of top-scoring domains: SWIRM: domain 1 of 1, from 201 to 291: score 87.6, E = 2.4e-22 *->iaeasyaawldlsaltpiEllsepEfflgktvsgsktpevYLviRns ++a+++++l+ +++t+ E++++p++ g++ t++v+L iRn+ mKIAA0601 201 VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQ----TQKVFLFIRNR 243 ilslwrlnptryltktdarrnlagkfnsDvnlvsrvydFLerwGyINy<- +l lw++np+++lt+++ + +l ++nsD lv rv+ +Ler+G+IN+ mKIAA0601 244 TLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINF 291 * mKIAA0601 - - Pyr_redox: domain 1 of 1, from 307 to 394: score -10.0, E = 0.64 *->rvvVvGGGyIGlElAsalaklGseVTvverldrlL.rglDeeaiaki +v+++G+G++Gl +A l ++G++VT++e++dr+ +r+ +++ mKIAA0601 307 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGgRVATFR-KGNY 352 lqerleknGievllnttveeieggdgdgkvssVvlentktgdgkeleaDl + ++G v+++ + +++ V +e+ k + + mKIAA0601 353 V----ADLGAMVVTGLGGNPMA-VVSKQ----VNMELAKIKQKCP----- 388 VlvAiG<-* + A G mKIAA0601 389 LYEANG 394 DAO: domain 1 of 1, from 307 to 758: score -34.0, E = 0.011 *->DVvVIGGGivGlstAyhLakrGlsVtllErg.digs.GaSgrnaGll +V++IG G+ Gl++A++L+ G +VtllE+++++g++ a++r + + mKIAA0601 307 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARdRVGGrVATFRKGNYV 353 hpg............................................... + ++ ++++ ++ + + + + + ++ ++ ++ mKIAA0601 354 ADLgamvvtglggnpmavvskqvnmelakikqkcplyeangqavpkekde 403 .................................................. ++ ++ ++ + + ++++ + + ++ ++ mKIAA0601 404 mveqefnrlleatsylshqldfnvlnnkpvslgqalevviqlqekhvkde 453 .lryleqgrWllldlvreagkerallarla.esrdl...wrel.e.leel + +++ k +++l +l + + l+++++el+++ +e mKIAA0601 454 qIEHWKKI-----------VKTQEELKELLnKMVNLkekIKELhQqYKEA 492 gidcdfrrtGglylar...deeeld.lerlaaalralGlpedvelLdaee +++ r + + ++++ + + +++ ++++ +G e e mKIAA0601 493 S-EVKPPRDITAEFLVkskHRDLTAlCKEYDELAETQGKLE-------EK 534 lrelePgls.pglvgalfypddghvdParlvraLar.............. l+ele ++p ++++d ++ ++ ++ ++ ++ ++ + ++ + mKIAA0601 535 LQELE--ANpP--SDVYLSSRDRQILDWHFANLEFAnatplstlslkhwd 580 ......................aAealGveilegteVtgleregggrvv. ++++ + ++++ + +++ + + A a G +i +t+V+ +++++ g + mKIAA0601 581 qdddfeftgshltvrngyscvpVALAEGLDIKLNTAVRQVRYTASG-CEv 629 VeTedGeirA.f.i.AdkVVnAaGawsdelarllgl.lprIvPYfLkplr + ++ ++ +f ++d+V + +++ + + + + mKIAA0601 630 IAVNTRSTSQtFiYkCDAVLCTLPLGVLK---QQPPaV------------ 664 d.iplrPvrGqvlvteplpealapallppdeavgdsrgvyiipreGgvli + +p P ++ v + + l+ ++l +d+ ++ mKIAA0601 665 QfVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW---------------- 698 Gattdgrldfgggpeevsg.didvdlarleellerarrlfPqLadadilr ++ + g++++++ + ++ +++ ++ P L + ++ mKIAA0601 699 -----DPSVNLFGHVGSTTaSRGELF----LFWNLYK--APILLAL-VAG 736 awaGlRpltpDglPiigtpDtskPviGrvpglpglyvatGhgghGltlap + aG++ D mKIAA0601 737 EAAGIMENISDDV------------------------------------- 749 aiGkllAel<-* ++G+ lA l mKIAA0601 750 IVGRCLAIL 758 Amino_oxidase: domain 1 of 1, from 315 to 853: score 417.7, E = 1e-121 *->laGLaAAreLlraGfqdVtvlEArdRvGGRvrtvrlkggdadgflie ++GLaAAr+L+++G+ dVt+lEArdRvGGRv t+r + +++++ mKIAA0601 315 VSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKG-----NYVAD 355 lGaqwflgaypnllnlllelglelglelfpftgdffldl.rrggrrpdvp lGa++++ + n ++ ++++ ++el + +++++l+ ++ ++++++ mKIAA0601 356 LGAMVVT---GLGGNPMAVVSKQVNMELAKIKQKCPLYEaNGQAVPKEKD 402 t.lplp..............lelel.leeeirl.l.ll.allllapelle + ++++ ++ + ++ +++l++ + ++++++l++ l+ +++l ++++++ mKIAA0601 403 EmVEQEfnrlleatsylshqLDFNVlNNKPVSLgQaLEvVIQLQEKHVKD 452 ldlesfsdrlsaqgflelalde............................ e + ++ q+ l+++l++ + +++ ++ +++ ++ ++ +++++ + mKIAA0601 453 EQIEHWKKIVKTQEELKELLNKmvnlkekikelhqqykeasevkpprdit 502 ................................................lf + ++++++ + ++ ++ +++++ +++ ++ + +++++ ++++ mKIAA0601 503 aeflvkskhrdltalckeydelaetqgkleeklqeleanppsdvylssRD 552 rsllagalgflelelsarlallslrlldledggatfpggglklplGgldq r++l++++ +le++++++l++lsl+++d++d++ +f g++l++ +G++++ mKIAA0601 553 RQILDWHFANLEFANATPLSTLSLKHWDQDDDF-EFTGSHLTVRNGYSCV 601 llaaaagllggrvrlntrVrsirqegdgvtvttedGetgtkgdesetiea ++a+a+gl+ ++lnt Vr++r+ ++g++v+ ++ + +++++ +++ mKIAA0601 602 PVALAEGLD---IKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKC 645 DaVivtvPlgvlkr..hlilflPpLpaakqeairrlgfgsvsKvflefet DaV +t+Plgvlk ++++++f+PpLp++k a++r+gfg+++Kv+l+f++ mKIAA0601 646 DAVLCTLPLGVLKQqpPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 695 pfwpengdhlfgaykgdlfgllvtdgedlsrggyvldtskssgsapsggr fw++++ lfg++++++ srg+++l+++ + ++ mKIAA0601 696 VFWDPSV---------NLFGHVGSTT--ASRGELFLFWNL--Y-----KA 727 gvllsyvlgdgagnreledlsdeelleavledLrkllgsdredvpdPvta ++ll++v+g++a +e+ sd+ ++ ++l L++++gs ++vp+P+ mKIAA0601 728 PILLALVAGEAA--GIMENISDDVIVGRCLAILKGIFGS--SAVPQPK-- 771 gdyrdtvvsrWstdpyargsysyppvgqdsrdrpalrepvgndnn..... +tvvsrW +dp+argsysy++ g++++d++ +++p+ ++++ + mKIAA0601 772 ----ETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPIT---Pgpsip 814 ....kdgdpglyfAGehtsggypgtveGAveSGlraArril<-* + ++++ p+l+fAGeht ++yp+tv+GA++SGlr+A ri+ mKIAA0601 815 gapqPI--PRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 853 //