hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03056a/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0600  ( 917 res)   mbg03056a

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Hist_deacetyl Histone deacetylase domain                370.2   2.2e-107   1
Mak16         Mak16 protein                            -163.8      0.081   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Mak16           1/1     261   414 ..     1   299 []  -163.8    0.081
Hist_deacetyl   1/1     477   823 ..     1   347 []   370.2 2.2e-107

Alignments of top-scoring domains:
Mak16: domain 1 of 1, from 261 to 414: score -163.8, E = 0.081
                   *->qsDdViWqiIGnksFCSFKiKtdetqnFCRNEYNVTGLCNRqSCPLA
                      qs +V+ + +      +   +t   ++  R+             PL+
   mKIAA0600   261    QSPLVTGERV------ATSMRTV--GKLPRHR------------PLS 287  

                   NSqYATireekGkiYLYmKtiERAHfPsKLWERiKLSkNYeKALeQIdeh
                          r+              +++P              +AL+Q  ++
   mKIAA0600   288 -------RTQS------------SPLPQS-----------PQALQQLVMQ 307  

                   LlYWpkylHihKCKQRltRitQyliRmRkLaLr.rqRLGekhlvPtikrK
                    ++ + +l   K KQ    +  +l++   L  +++      h + t   +
   mKIAA0600   308 QQH-QQFL--EKQKQQQMQLGKILTKTGELSRQpTT-----HPEETEEEL 349  

                   verREkrREeKALvAAkLekaIEkELLeRLkqGtYGdlpYNfsesKKKmK
                   +e  E+ + e AL       +I +E          +++    ses     
   mKIAA0600   350 TEQQEALLGEGAL-------TIPRE---------GSTE----SES----- 374  

                   NKDSELTKIFDVmGENKDEmKKKGKKGKDENVNYETmSQEafkKaLeaee
                                                                   +e
   mKIAA0600   375 -----------------------------------------------TQE 377  

                   veenDEdEeEdeDDEDEDVDmDDEeEEeDegEiEyVsDddEdEdvdeleD
                    +++ E+EeE             EeEEe+e+ i++ + d+E+  + e  D
   mKIAA0600   378 -DLE-EEEEE-------------EEEEEEEDCIQVKDEDGESGPD-EGPD 411  

                   lEd<-*
                   lE+   
   mKIAA0600   412 LEE    414  

Hist_deacetyl: domain 1 of 1, from 477 to 823: score 370.2, E = 2.2e-107
                   *->tvayvydpevlnyhfktisygagHpenpeRlrlihelLleygllkkm
                      t+++vyd ++l++  + +++   Hpe  +R++ i++ L e+gll k+
   mKIAA0600   477    TTGVVYDTFMLKHQ-CMCGNTHVHPEHAGRIQSIWSRLQETGLLGKC 522  

                   eivtnsqeprkatdeelllvHsedyveflesvsptnlekldkgtNeielk
                   e ++     rkat++e++ vHse ++  +  +sp n++kld+       k
   mKIAA0600   523 ERIR----GRKATLDEIQTVHSEYHTLLY-GTSPLNRQKLDS-------K 560  

                   yfn.................vgdDtpvfaglye.aaqlsvGgaldaadrl
                   + +++ +++     + ++ +v++Dt ++++  ++a + +vG+ +++a ++
   mKIAA0600   561 KLLgpisqkmyamlpcggigVDSDTVWNEMHSSsAVRMAVGCLVELAFKV 610  

                   legeldiainwagGPgHHAkkgeasGFCylNniAiAIlellkkyPyveRv
                   ++gel+++++ +++PgHHA+ ++a+GFC++N +Ai ++ l++k+  v +v
   mKIAA0600   611 AAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKL-SVGKV 659  

                   liiDiDvHHGDGTQeiFYnddrVltvSfHkygkGefFPGTieGditeiGk
                   li+D+D+HHG+GTQ++FYnd+ Vl++S+H+y++G+fFPG+  G ++e+G 
   mKIAA0600   660 LIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEVGG 707  

                   gkGkgytlNiPLl....edGtdDesYleafktiiepvleqFkPdaivvsa
                   g G gy++N+ + ++ +++ ++D +Yl af+t+++p++ +F Pd+++vsa
   mKIAA0600   708 GPGVGYNVNVAWTggvdPP-IGDVEYLTAFRTVVMPIAQEFSPDVVLVSA 756  

                   GfDalegD..ptmqLgsfnLTiegygeivrflkslaqkhcdgpllvVlEG
                   GfDa eg+ +p   Lg++++T +++g+ +r l+ la    +g++++ lEG
   mKIAA0600   757 GFDAVEGHlsP---LGGYSVTARCFGHLTRQLMTLA----GGRVVLALEG 799  

                   GYtlraiasavarcwialtggllg<-*
                   G +l ai+ a   c+ al+++ l+   
   mKIAA0600   800 GHDLTAICDASEACVSALLSVELQ    823  

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