hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg05574/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0598 ( 611 res) mbg05574 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sulfotransfer_1 Sulfotransferase domain -22.5 2.3e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sulfotransfer_1 1/1 303 605 .. 1 363 [] -22.5 2.3e-05 Alignments of top-scoring domains: Sulfotransfer_1: domain 1 of 1, from 303 to 605: score -22.5, E = 2.3e-05 *->pdDvlivtypKSGTTWlqeilslhpDvFYLfEPLwHVeiynrgdfss ++++ i++ pK+GTT l+ l+l ++ +f mKIAA0598 303 LPHFYIIGQPKCGTTDLYDRLRL---------------HPE-VKF-- 331 pekceepp...........lfnnphdrvPfLElydlffPealesvgpeLF ++++ep+ ++++ + +l + +dr+P ++ dlf + a+++ mKIAA0598 332 -SAIKEPHwwtrkrfgivrLRDGLRDRYPVEDYLDLFDLAAHQIH----- 375 rrgSRLCsPVCdfkei.k.sdckrlcgllnlelalekcrsyfhveegver + ++ + ++++ n + e+++s +++ mKIAA0598 376 ---------------QgLqAASAEQPSKMNKIIIGEASASTMWDNNAWTF 410 lknlp...sPRllk.DTHLPlhlLPkslldskcKiIYvvRNPkDvaVSyY ++++++++ P +l++D +h + + +K I ++R+P +++S+Y mKIAA0598 411 FYDNStdgEPPFLTqDF---IHAF-----QPEAKLIVMLRDPVERLYSDY 452 hfsrmlkewmkvltervilpepgtpffevlanal.effelFla....... ++ + + + +++ e +e ++lF + + + mKIAA0598 453 LYFASSN-----------KSADDF--HE----KVtEALQLFENcmldysl 485 ..............GkvvyGsyfdHvkgwwkaslrkpenvLflrYEDlke + +++ ++ + +++ G y+ +++ w++ + +e++L+lr ED + mKIAA0598 486 racvynntlnnampVRLQVGLYAVYLLDWLT--VFSKEQFLILRLEDHAS 533 DPrgeikkiaeFLGkp.lseEeEeGrldkilkhlsFenmKgnpmvnysel + + ++ k+ +FL + +lse++ m + p++n mKIAA0598 534 NVKYTMHKVFQFLNLGpLSEKQ----EAL---------MTKSPASNT--- 567 pteimdhengiEspffRKGivgdWGRqknhftveqaekfdeiye.hN.kl ++ + ++ W +t + ++e+y+++N+ l mKIAA0598 568 ------------RRPEDRSLGPMW-----PITQ---KILREFYGpFNtRL 597 sekmkgtg<-* + +++ mKIAA0598 598 AQVLDDEA 605 //