hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02022/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0596  ( 1070 res)   mbg02022

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   124.1    1.6e-32   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6      32    71 ..     1    46 []    22.3    0.068
WD40       2/6      74   116 ..     1    46 []    19.0     0.48
WD40       3/6     120   161 ..     1    46 []    19.1     0.47
WD40       4/6     168   208 ..     1    46 []     7.0       39
WD40       5/6     211   253 ..     1    46 []    17.0        1
WD40       6/6     256   295 ..     1    46 []    41.6    1e-07

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 32 to 71: score 22.3, E = 0.068
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k   +l   +   +++sv++sp+g      ++lasg++ gt+r+ 
   mKIAA0596    32    GdKADGSLMDPRV--GIRSVCISPNG------QHLASGDrMGTLRIH 70   

                   d<-*
                   +   
   mKIAA0596    71 E    71   

WD40: domain 2 of 6, from 74 to 116: score 19.0, E = 0.48
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +   + ++H++  +++++ +s  + +    +llas+s+D+ i++ 
   mKIAA0596    74    SlSEMLKVEAHDS--EILCLEYSKPDTG---LKLLASASrDRLIHVL 115  

                   d<-*
                   d   
   mKIAA0596   116 D    116  

WD40: domain 3 of 6, from 120 to 161: score 19.1, E = 0.47
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +l +tl+ H++  ++t+v+f  ++    +  +++s++ D++i++ 
   mKIAA0596   120    EySLQQTLDEHSS--SITAVKFAASD----GQVRMISCGaDKSIYFR 160  

                   d<-*
                       
   mKIAA0596   161 T    161  

WD40: domain 4 of 6, from 168 to 208: score 7.0, E = 39
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        + +rt +  ++ +  +++++ p+       ++ a g++D++ir++
   mKIAA0596   168    GvQFTRTHHVVRK-TTLYDMDVEPSW------KYTAIGCqDRNIRIF 207  

                   d<-*
                   +   
   mKIAA0596   208 N    208  

WD40: domain 5 of 6, from 211 to 253: score 17.0, E = 1
                   *->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl
                      ++k+ + +kg +ge++    v+ +p+g       ++a++++D+++ +
   mKIAA0596   211    SgKQKKLFKGSQGEdGTLIKVQTDPSG------IYIATSCsDKNLSI 251  

                   Wd<-*
                   +d   
   mKIAA0596   252 FD    253  

WD40: domain 6 of 6, from 256 to 295: score 41.6, E = 1e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++++t+ gH+    Vt+++fs d       ++l+s s+D++i +W
   mKIAA0596   256    SgECVATMFGHSE--IVTGMKFSNDC------KHLISVSgDSCIFVW 294  

                   d<-*
                       
   mKIAA0596   295 R    295  

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