hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg02022/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0596 ( 1070 res) mbg02022 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD domain, G-beta repeat 122.8 6.5e-33 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/6 34 71 .. 1 38 [] 22.9 0.0078 WD40 2/6 76 116 .. 1 38 [] 21.7 0.018 WD40 3/6 122 161 .. 1 38 [] 20.1 0.053 WD40 4/6 167 208 .. 1 38 [] 5.8 40 WD40 5/6 216 253 .. 1 38 [] 15.7 1.1 WD40 6/6 258 295 .. 1 38 [] 37.4 3.3e-07 Alignments of top-scoring domains: WD40: domain 1 of 6, from 34 to 71: score 22.9, E = 0.0078 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* + +l + ++++v++sp+ g++lasg r gt++i + mKIAA0596 34 KADGSLmDPRVGIRSVCISPN-GQHLASGDRMGTLRIHE 71 WD40: domain 2 of 6, from 76 to 116: score 21.7, E = 0.018 *->eclavl.gHtspVtcvafspd..sgpllasgSrDgtikiWd<-* ++H s + c+ +s ++++ +llas+SrD+ i++ d mKIAA0596 76 SEMLKVeAHDSEILCLEYSKPdtGLKLLASASRDRLIHVLD 116 WD40: domain 3 of 6, from 122 to 161: score 20.1, E = 0.053 *->eclavl.gHtspVtcvafspd.sgpllasgSrDgtikiWd<-* ++++l+ H+s++t+v+f+ ++++ +++s+++D++i+ mKIAA0596 122 SLQQTLdEHSSSITAVKFAASdGQVRMISCGADKSIYFRT 161 WD40: domain 4 of 6, from 167 to 208: score 5.8, E = 40 *->eclavl.gHtspVtcvafspd....sgpllasgSrDgtikiWd<-* e ++ + H + V+ + ++s ++ a g+ D++i+i++ mKIAA0596 167 EGVQFTrTH-HVVRKTTLYDMdvepSWKYTAIGCQDRNIRIFN 208 WD40: domain 5 of 6, from 216 to 253: score 15.7, E = 1.1 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* ++ + +g ++ v +p+ g ++a++++D+++ i+d mKIAA0596 216 KLFKGSqGEDGTLIKVQTDPS-GIYIATSCSDKNLSIFD 253 WD40: domain 6 of 6, from 258 to 295: score 37.4, E = 3.3e-07 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* ec+a+ gH+ Vt ++fs d +++l+s S D +i +W mKIAA0596 258 ECVATMfGHSEIVTGMKFSND-CKHLISVSGDSCIFVWR 295 //