hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04268/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0595  ( 1646 res)   mbg04268

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           39.1    5.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/1    1526  1597 ..     1   121 []    39.1  5.8e-07

Alignments of top-scoring domains:
RRM: domain 1 of 1, from 1526 to 1597: score 39.1, E = 5.8e-07
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++f+g +  p  +t ++L++ F              s fG+++++ i
   mKIAA0595  1526    VVFIGKI--PGRMTRSELKQRF--------------SVFGEIEECTI 1556 

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                       +                          +++FV+++ +e+A +A  i
   mKIAA0595  1557 HFRVQ------------------------GDNYGFVTYRYAEEAFAA--I 1580 

                   ealnaskGkeledgGrptlglrVe<-*
                   e  +  k ++   + +p     +    
   mKIAA0595  1581 ESGH--KLRQA--DEQP---FDLC    1597 

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