hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg04268/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0595 ( 1646 res) mbg04268 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, o 28.7 0.00014 1 Atrophin-1 Atrophin-1 family -672.9 0.86 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Atrophin-1 1/1 438 1386 .. 1 1064 [] -672.9 0.86 RRM_1 1/1 1527 1593 .. 1 74 [] 28.7 0.00014 Alignments of top-scoring domains: Atrophin-1: domain 1 of 1, from 438 to 1386: score -672.9, E = 0.86 *->GkhsmrtrlyrGststllSGRKKqPasPdGraaavsvdvrssGknsP s + Gs + GRKK + a + + s mKIAA0595 438 --QSLPASASQGSQKVPRKGRKKK---NKEQSTACVEACTRRLRSSS 479 saastiSnDsKAEA...vKKsAKKVkeeaASglknTKRqREKvAsDtEDt st+S + A+++ K+ + eaA + K mKIAA0595 480 RGQSTVSAEVNSQAgssQKQPQEELQREAAAPQSRGK------PRAWARA 523 DRAtsKKtKtqEisrPt...sPveGenlsSdsrsvNDEGssDPKDiDqDf A Kt + r +++sP e + l ++ q + mKIAA0595 524 WAAALEKTGSENLERSAgqdSPAEEDALDLCPKLLE---------TSQAN 564 rsvsPslPsPqdlrslsdaSAsqqgLqaQPlalqlPSgaAsaqstGGlPP + s + d + + + + q+ Sg s P mKIAA0595 565 PTLSLNDSAQADSMPVDSVEGDSPAVGNAAPGDQASSGTELVGSL---PV 611 Gte.klPTlaPsPsattlPPasSsAtaqPmRFPysssSsvaaA...Assl G+ P la +A a P +s ++A+ A + mKIAA0595 612 GPNlTSPVLADKKGI-------EPAVAVP------TSDNLSPAdvlANTV 648 issssslasPflaSqal....PlyPmsaPPstsLsvSaQPPKytQPSLhs + P +a + l + +P P a aQ PSL s mKIAA0595 649 AAD-PVPNDPAPADPVLvkcrPTDPRRAAAAAA--AAAQG---SRPSLQS 692 QavpsPHsLqtGPLLQgPgPPqPyGRLlanSsagqGPl..gPStaAqst. p ++ GPl+ St A t+ mKIAA0595 693 ADHPK--------------------VVSPEGKDVVGPLkvEGSTSA-TTq 721 .AHPPvstHHstiQlqasQsalQqQQqhre..nslPPaPlAfPHPLEGGs +A P l + Qq Q e++ns PP + P mKIAA0595 722 eAKP------RPLSLSEYRQRRQQRQTEAEdrNSQPPVVGKWPS-----L 760 sikahPyamiPsLGsLRPYPagqAHkhPPH...LSqvSyfsanaNlPPvs + a iP L P +A k P ++++ + s + N Pvs mKIAA0595 761 PETPTELADIPCL-----VPSAPARKTAPQrspIAVPETVSVGSN--PVS 803 salkslSS...lStgs.yPsaHPsPlQLgPQsaPlPf.sPvqPtvlTsSa + ++ S+ +St+s+ s+H Pl + P PlP+ sP+ P T a mKIAA0595 804 PTPEPSASklmVSTHSeQVSSHEMPLAVRPPPPPLPSvSPAGPIPSTVPA 853 sLstv...iatvASsPatykla........svPs.........qsPygkr L+ ++++++ S P ++ ++ ++++ ++P+ + + ++ ++ Py + mKIAA0595 854 PLPPFppsVPPLLSLPSGGHGVprlpppplQPPGlpvsmrqmpPDPYTQY 903 afvP..GayktiTPPsy...kPGsPPsF..RTsTPPaYRGtSssaqPGtF a+vP+ y+ + PP+y+ +P PP + +TP Y + P + mKIAA0595 904 APVPpwSCYPSVSPPGYsclPP--PPTMpiVSGTPGTYAVPPTCNVP--W 949 KPgSaaVssGglvPaaPS...gLPsLPPPPA.APAsGPPLsAvQIKeEal P a Vs+ a S + g P L PP s PPLs v + mKIAA0595 950 VPPPAPVSPYSSSCAYGSlgwG-PGLQQPPFwSTVSPPPLSSV-----PT 993 dEaEePESPvPPaRSP.SPePkVVDvPSHASQSARFyKHLDRGyNSCAR. a P Pv P P SP+ V P S S G S A + mKIAA0595 994 GRA-VPPTPVEPSGDPaSPPEDVLPGPVTPSLSS--------GPASPAAp 1034 ....sDLYFvPLeGSKLAK.KRedlvEKvkREA......EQkAREEkERE + +++ P S K+K lv + A+++ ++E EE E mKIAA0595 1035 pvepTKPEAQPVPVSPQPKhKVSTLVQSPQIKApptlstEGVVFEESVSE 1084 kEkEkEkEREREkERElERavkkAsssAqEGRAPledPsLsGPvhmRPsF + k +E R kE + a+k + P mKIAA0595 1085 RLKSETQE-NRPKEKPISTAIKS-----------VPVPKQ---------- 1112 EPPgsavAaVPPYlGPDTPA.LRTLSEYARPHVMSPtNRNHPFYvPLnav savA P PA+LR LS Pt R ++ mKIAA0595 1113 ----SAVAKLPAV----HPArLRKLS-------FLPTPRAQ------GPE 1141 DPGLLaYnvP.aLYsvDPaiRERELREREiREREiRERdLRdRlKPG... D a+ + +D E E+ E d l G+++ mKIAA0595 1142 DV-VQAFISEiGIEASDLSSLL-EQFEKSEAKKECPLPASADSLAVGnsg 1189 .FEVKPsELdPLHgvtnPGldhFaRHsaLalqPaPaGlHPFAsFHPsLnP + + P E PL P a +L+ +Pa +H P mKIAA0595 1190 sIDI-PQEKKPLDRLQAP---ELANVAGLT-PPA-TPPHQL------WKP 1227 LERERLALAAGPaLRPdMSYadRLAAE.RiHAERvAaLtsDPLARLQMlN L A L + A E+ E + A LQ mKIAA0595 1228 LA----AV----SLLAKAKSPKSTAQEgTLKPEGITEAKPPATACLQE-- 1267 VTPHHHQHSHIHSHLHLHQQDalHaaSAsPVHPLvDPLaaGsH..LaRiP a S sPVH +G H+ R mKIAA0595 1268 -----------------------GAHSPSPVH-----VGSGDHdyCVRSR 1289 YPaGTLPNPLLgqPlHEnEvLRHq.lFaaPYPRDLPaalsa.PMSAAHQL P+ +P v RHq++ P L a ++ P A Q mKIAA0595 1290 TPPKRMPALVISEVGSRWNVKRHQdITIKPV-LSLGSAAPPlPCTATSQE 1338 QAMHAQSAELQRLAlEqQQWLHaHhhlHsvhL.PaQEDYYSrLKKE.sDK H S E a l s +P r E+sDK mKIAA0595 1339 PLDHRTSVEQADPSAP----CFAPSTLLSPEAsPCRSEMNARTPPEpSDK 1384 qL<-* q mKIAA0595 1385 QQ 1386 RRM_1: domain 1 of 1, from 1527 to 1593: score 28.7, E = 0.00014 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV +f+g +p +t+++Lk+ Fs fG+ie++ i + +++FV mKIAA0595 1527 VFIGKIPGRMTRSELKQRFSVFGEIEECTIHFR-----VQGDNYGFV 1568 eFedeedAekAldalnGkelggrelrv<-* ++ e+A +A++ G++l++ mKIAA0595 1569 TYRYAEEAFAAIE--SGHKLRQADEQP 1593 //