hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj01161/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0593  ( 731 res)   mbj01161

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
TRAP_240kDa TRAP240                                    1233.5          0   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
TRAP_240kDa   1/1       1   568 [.     1   680 []  1233.5        0

Alignments of top-scoring domains:
TRAP_240kDa: domain 1 of 1, from 1 to 568: score 1233.5, E = 0
                   *->PmdNvdDvSmlsSqDivRmLlslQPvLQDAiqKKrtggtwsKDASis
                        d +                               + +        
   mKIAA0593     1    GTDES------------------------------AVVPEI------ 11   

                   ttVsGPLTWqQFHklAGRasYgtnLINQNYEspEPLPIPtilVGYdkDwL
                             QFHk  G   Y t+      EspEPLPIPt+l+GYd+D+L
   mKIAA0593    12 ---------HQFHKSLGQPFYETD------ESPEPLPIPTFLLGYDYDFL 46   

                   evsPfsipfWdkllLEPYspkRDvaYvVlCPdNEAllngaksFFRDLSai
                   ++sPf++p+W+kl+LEPY+++RD+aYvVlCP+NEAllnga+sFFRDL+ai
   mKIAA0593    47 VLSPFALPYWEKLMLEPYGSQRDIAYVVLCPENEALLNGARSFFRDLTAI 96   

                   YEmCrLGqHkPiqklLrDGilqVGqaaaakladslvtewfsQlqsgqenq
                   YE+CrLGqH+Pi++lL+DGi++VG++a++kl+++ vtewfsQ+++g +n+
   mKIAA0593    97 YESCRLGQHRPISRLLTDGIMKVGATASKKLSEKFVTEWFSQAADG-NNE 145  

                   alaeqlkrYAqacrhqLAPYLAalqlDSSLLypPdLvaPtsqsYytPPaa
                   a++ +lk+YAq+cr++L+PYLA+ +lDSSLL++P+LvaP  qs+ t P++
   mKIAA0593   146 AFS-KLKLYAQVCRYDLGPYLASQPLDSSLLSQPNLVAPPNQSLVTAPQM 194  

                   agsgaantefgplassnSslltvtsGvaisttviqaGsyLkelStssSen
                   +++g+an ++++las++Ss++t+tsGv ist+v++a+s+L+++S ssS++
   mKIAA0593   195 TNTGNANAPSATLASAASSTMTMTSGVPISTSVATANSTLTTTSSSSSSS 244  

                   nclvLYIVNPFSglSgisLPnqnqnqnqNSnsapstspQvqtvsssGFsn
                     l+       Sg+S+++LP++++++++N    +s+s Q++tv+    s+
   mKIAA0593   245 --LS-------SGVSSNKLPSFPPFGSMNTSGTGSMSAQASTVQ----SG 281  

                   kikGQtqtnedisairtsGviGkssCFQTIVRDttpgQSlSITIQtkPDv
                   +++GQ+      s ++ +G++G+s         ++p+       Q++PDv
   mKIAA0593   282 QLGGQQ-----SSSLQAAGISGESA--------SLPT-------QPHPDV 311  

                   iEsillrDklGIPtsgesaeSvinKCRRISTISPpAiViYmNNvnPFtye
                   +Es+++rDk+GIPt+g+s++  ++         PpAiV+Y+  ++PFtye
   mKIAA0593   312 SESTMDRDKVGIPTDGDSHA-ITY---------PPAIVVYI--IDPFTYE 349  

                   nanessnssslWllaLlRCyaEmLkiLPdhvrSsvsiqIipcqsvlqstk
                   n +es+nss++W+l+LlRC++Em+++LP+h++S+vs+qI+pcq++lq++k
   mKIAA0593   350 NKDESTNSSNVWTLGLLRCFLEMVQTLPPHIKSTVSVQIVPCQYLLQPVK 399  

                   tenrktysQelkSLAfsiFsQCRRpLptsqqvKsLTGFGpaatmEttLkv
                   + +r++ysQ+lkSLAfs+F+QCRRpLpts++vK+LTGFGp+++mEt+Lk+
   mKIAA0593   400 HDDRQIYSQHLKSLAFSVFTQCRRPLPTSTNVKTLTGFGPGLAMETALKS 449  

                   pdrPslrpikLYtpPFiLAPvkdkQtelDFSRSAGetfGeaeQkYnVlfv
                   pdrP+  +i+LYtpPFiLAPvkdkQtel      GetfGea+QkYnVlfv
   mKIAA0593   450 PDRPE--CIRLYTPPFILAPVKDKQTEL------GETFGEAGQKYNVLFV 491  

                   gYCLShDqrWlLAtctDerGELLEtcvINIavPNRARRsKisARyiWKDg
                   gYCLShDqrW+LA+ctD++GELLEtc+INI+vPNRARR+K sAR +   g
   mKIAA0593   492 GYCLSHDQRWILASCTDLYGELLETCIINIDVPNRARRKKGSARRF---G 538  

                   LqKLWefLTEiiGlvslsSqPWRVVIGRlGRIG<-*
                   LqKLWe+   ++Glv++sS+PWRVVIGRlGRIG   
   mKIAA0593   539 LQKLWEW---CLGLVQMSSLPWRVVIGRLGRIG    568  

//