hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm05364/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0591 ( 1162 res) mpm05364 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- KISc Kinesin motor, catalytic domain. ATPase. 599.2 1.5e-175 1 FHA Forkhead associated domain 29.7 0.00041 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KISc 1/1 15 368 .. 1 404 [] 599.2 1.5e-175 FHA 1/1 521 578 .. 1 49 [] 29.7 0.00041 Alignments of top-scoring domains: KISc: domain 1 of 1, from 15 to 368: score 599.2, E = 1.5e-175 *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv....tvtvn... +++VavRv RP+n rE+s + s++++++++++t ++n+++ mKIAA0591 15 GASVKVAVRV---RPFNSRETSKE----SKCIIQMqgnsTSIINpkn 54 .......FtFDkVFW....rydvddpsasQedVFeevaaPLvdsaldGYN +++ +++F+FD+++W+++++ +d+ +asQ V+++++++++ +a++GYN mKIAA0591 55 pkeapksFSFDYSYWshtsP--EDPCFASQNRVYNDIGKEMLLHAFEGYN 102 vaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiIPRaledl v +IFAYGQTG+GK+yTM+G ++ ++GiIP +e+l mKIAA0591 103 V-CIFAYGQTGAGKSYTMMGKQEE-------------SQAGIIPQLCEEL 138 Fekide.......fsVkvSylEIYNEkirDLLspspenSksrGkhakqss Feki+++ +++ ++sV+vSy+EIY+E++rDLL+p++ mKIAA0591 139 FEKINDncneemsYSVEVSYMEIYCERVRDLLNPKN-------------- 174 kkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlelle k++Lr+rE++ g+yV++L+ V+S+ ++ +l++ mKIAA0591 175 KGNLRVREHPL---------------LGPYVEDLSKLAVTSYTDIADLMD 209 rGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadektesstnegt Gnk RtvaaT+mNe SSRSHa+Fti+ +qk + + mKIAA0591 210 AGNKARTVAATNMNETSSRSHAVFTIVFTQK-----------KQDPETNL 248 eqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInA ++ k+sk++LVDLAGSERa++Tg a G RLkE++nINkSL++LG+VI+A mKIAA0591 249 STEKVSKISLVDLAGSERADSTG--AKGTRLKEGANINKSLTTLGKVISA 296 LaddshdsaeseatkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMIan La+ ++++k +IPYRDS+LT+LL++ LGGNs+T+M+a mKIAA0591 297 LAE----------VSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAA 336 vSPsssnyeETlsTLrFAsRaksIknkpavne<-* +SP+++ny+ETlsTLr+A+Rak+Ik+++++ne mKIAA0591 337 LSPADINYDETLSTLRYADRAKQIKCNAVINE 368 FHA: domain 1 of 1, from 521 to 578: score 29.7, E = 0.00041 *->tvtiGRss....cdivlpspsiSRrHaeiv..dgd......yliDlg +++G + +++ divl+++ i +H+ ++++++++++ l+++ mKIAA0591 521 ITRVGQADaerrQDIVLSGAHIKEEHCLFRseRSNtgevivTLEPCE 567 enSsNGTfVNgrrv<-* + T+VNg+rv mKIAA0591 568 ---RSETYVNGKRV 578 //