hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05621/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0585  ( 330 res)   mbg05621

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                     74.3    2.6e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjC       1/1     206   311 ..     1   126 []    74.3  2.6e-18

Alignments of top-scoring domains:
JmjC: domain 1 of 1, from 206 to 311: score 74.3, E = 2.6e-18
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      w+ +G+p S t++Hi++ g++ +++ ++ ++k W+++P+ +++++  
   mKIAA0585   206    WFVMGPPRSGTGIHIDPLGTS-AWNALVQGHKRWCLFPTNTPRELI- 250  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                     k+ +++       gg+q+d+++ +++ ++++++lp +   +++ +++Q
   mKIAA0585   251 --KVTREE-------GGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQ 291  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   kpGE+Vf+++          + + e+  +   
   mKIAA0585   292 KPGETVFVPG---------IDELEETIPV    311  

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