hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg02025/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0581 ( 962 res) mbg02025 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PLCXc Phospholipase C, catalytic domain (part); do 261.4 7.2e-74 1 PLCYc Phospholipase C, catalytic domain (part); do 245.2 5.5e-69 1 C2 Protein kinase C conserved region 2 (CalB) 56.8 2.9e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PLCXc 1/1 60 211 .. 1 182 [] 261.4 7.2e-74 PLCYc 1/1 284 400 .. 1 119 [] 245.2 5.5e-69 C2 1/1 421 520 .. 1 92 [] 56.8 2.9e-12 Alignments of top-scoring domains: PLCXc: domain 1 of 1, from 60 to 211: score 261.4, E = 7.2e-74 *->qDmdkPLshYfInsSHNsGtfkidiFPFGLDAPEKLRLPPYVTFLLR +Dm++PLshYfInsSHN mKIAA0581 60 EDMSQPLSHYFINSSHN------------------------------ 76 FTYLtgkQlwgessvegYiqaLkaGcRcvELDcwdgpdg..ePviyHGhT TYLt Ql+g ssve+Y+q+L +GcRcvELDcw g+ ++ePvi+HG+T mKIAA0581 77 -TYLTAGQLAGNSSVEMYRQVLLSGCRCVELDCWKGRTAeeEPVITHGFT 125 ftskikLsdVleaIKkfAFvtSpyPEFvIlSLenHc.spdqQakmaqmfk +t++i++++V+eaI++ AF+tSp+P + lS+enH++sp qQakma++++ mKIAA0581 126 MTTEISFKEVIEAIAECAFKTSPFP--ILLSFENHVdSPKQQAKMAEYCR 173 eiFgdlLytkPltsseeypgsnLPsPeqLkgKILLkgK<-* iFgd L+++Pl+ + g LPsP +L++KIL+k+K mKIAA0581 174 LIFGDALLMEPLEKYPLESGVPLPSPMDLMYKILVKNK 211 PLCYc: domain 1 of 1, from 284 to 400: score 245.2, E = 5.5e-69 *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekapt +s+Lv+y++pvkF sfe ++++ n + emsSf+Etk +l+k+p mKIAA0581 284 MSNLVNYIQPVKFESFEISKKR-NKSFEMSSFVETK-GLEQLTKSPV 328 dfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaMq +fv+yN+ qLsR+YPkGtRvDSSNY+Pq fWnaGcQMVALNfQT D+aMq mKIAA0581 329 EFVEYNKMQLSRIYPKGTRVDSSNYMPQLFWNAGCQMVALNFQTVDLAMQ 378 lNqGmFraNGgCGYVLKPefLR<-* +N+Gm ++NG +GY LKPef+R mKIAA0581 379 INMGMYEYNGKSGYRLKPEFMR 400 C2: domain 1 of 1, from 421 to 520: score 56.8, E = 2.9e-12 *->tLtvkiisArnLp....DPYVkvs.............kTkvvkktls tL vkiis++ L +++ YV+v + + +++++ kTk+ +++ mKIAA0581 421 TLSVKIISGQFLSdkkvGTYVEVDmfglpvdtrrkafKTKTSQGNA- 466 gfNPvWnEesetFeFevpp....s.LeieVyDk..dfiGrvtippnnahq NPvW+Ee ++F+ + ++ + L+i y+++++fiG+ ++p mKIAA0581 467 -VNPVWEEE--PIVFKKVVlpslAcLRIAAYEEggKFIGHRILP------ 507 hsadglihlsell.ggrh.kl<-* ++ +++g+++ l mKIAA0581 508 --------VQAIRpGYHYiCL 520 //