hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg06775/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0580 ( 945 res) mbg06775 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RhoGAP GTPase-activator protein for Rho-like GTPase 183.3 2.3e-50 1 PH Pleckstrin homology domain. 131.6 8.3e-35 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/3 133 245 .. 1 82 [] 44.1 1.9e-08 PH 2/3 255 354 .. 1 82 [] 28.2 0.0011 RhoGAP 1/1 366 542 .. 1 193 [] 183.3 2.3e-50 PH 3/3 671 775 .. 1 82 [] 63.2 3.3e-14 Alignments of top-scoring domains: PH: domain 1 of 3, from 133 to 245: score 44.1, E = 1.9e-08 *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk.. ++ +L++ ++ ++ ++ ++ k+++vL +g+L+yy++++ mKIAA0580 133 SFLCDFLYQTAaaasrvssekklLeDTNKKWCVLEGGFLSYYENDrc 179 .kpkgsipLsgcsvre.p............cFeivt.dr.tlllqAesee ++p g+i++s++++ ++++ + ++ +Fei+ ++++++l+ Ae+++ mKIAA0580 180 tTPNGTINISEVICLAvHkedfylntgpifVFEIYLpSErVFLFGAETSQ 229 ereeWvealqsaiaka<-* +++W e + + + mKIAA0580 230 IQRKWTETIAKRFVPF 245 PH: domain 2 of 3, from 255 to 354: score 28.2, E = 0.0011 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk..kpkgsipLs + G+L k + +++w+k +f ++ ++L+++ + +++ ++++L+ mKIAA0580 255 YDLIGQLFYKDchaLdQWRKGWFAMDKSSLCFCLQTqeAQEERMNLR 301 gc.svre.p.........cFeivt.drtlllqAeseeereeWvealqsai +++++ ++ ++++ +++ +v ++rtl+++ ++ +++ W +a+++a+ mKIAA0580 302 RLqELTIsTmvqngekvdVLLLVEkGRTLYIHGHTKLDFTVWHTAIEKAA 351 aka<-* mKIAA0580 352 GTD 354 RhoGAP: domain 1 of 1, from 366 to 542: score 183.3, E = 2.3e-50 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. ++Piiv +Ci+++ ++Gl ++ IY++ G ++ eL+e+f ++ + mKIAA0580 366 NDVPIIVNSCIAFVTQYGLGCKYIYQKDGDPLHISELLESFKKDARs 412 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie + ++ +++ dv+g+LK++L + + Llt+ely+ +++ mKIAA0580 413 V-----------KLRAGKHQLEDVTGVLKSFLSDIDDALLTKELYPYWVS 451 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL a +de er ++r ++++LP +nratL +L++HL mKIAA0580 452 ALDT--------------QDEKERTSKYRAFIRSLPGVNRATLAALIeHL 487 nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl +rV+++se N+M+a+NLA+vF+ +L++ +++++++ + +++n++ve++ mKIAA0580 488 YRVQKCSEINHMNAHNLAMVFSSCLFQTKgqtseevNVIEDLINNYVEIF 537 ienad<-* +++d mKIAA0580 538 EVKED 542 PH: domain 3 of 3, from 671 to 775: score 63.2, E = 3.3e-14 *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk...kpkg ikeG L+ k+ +++ +++++++r +vL++g L++yk+++++k+ + mKIAA0580 671 SIKEGILKLKEepskilsGnKFQDRCVVLRDGHLFIYKDPkssKHDK 717 sipLsgcsvre.p..........cFeivt.drtlllqAeseeereeWvea ++pL+ ++++ +++++ +++ + +++++++++ ++l+++s + + eW+++ mKIAA0580 718 MFPLRAMKFYLgVkkkmkpptswGLTVYSeKHHWHLCCDSLQAQMEWMAS 767 lqsaiaka<-* + a++++ mKIAA0580 768 IFIAQHEN 775 //